Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773771

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773771 Profile download	7020000000000000000000	Sequence Read Archive	SRP074598	SRP074598_M398	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	Blastocyst	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000206931	RNU6-1042P	RNA, U6 small nuclear 1042, pseudogene	3.2076	0.0000
2	ENSG00000227134	OTX2P2	OTX2 pseudogene 2	3.1699	0.0000
3	ENSG00000227692	MED28P3	mediator complex subunit 28 pseudogene 3	3.0000	0.0000
4	ENSG00000233359		novel transcript	3.0000	0.0000
5	ENSG00000229638	RPL4P4	ribosomal protein L4 pseudogene 4	2.9760	0.0000
6	ENSG00000236185	HNRNPDLP3	HNRNPDL pseudogene 3	2.9037	0.0000
7	ENSG00000186119	OR5D18	olfactory receptor family 5 subfamily D member 18	2.8074	0.0000
8	ENSG00000255196	OR4A17P	olfactory receptor family 4 subfamily A member 17 pseudogene	2.8074	0.0000
9	ENSG00000256361		glycine cleavage system protein H (aminomethyl carrier) (GCSH)	2.8074	0.0000
10	ENSG00000279395	OR5L1	olfactory receptor family 5 subfamily L member 1	2.8074	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000162676	GFI1	growth factor independent 1 transcriptional repressor	-2.3738	0.0000
63127	ENSG00000182521	TBPL2	TATA-box binding protein like 2	-2.3734	0.0000
63126	ENSG00000280353		TEC	-2.3732	0.0000
63125	ENSG00000247416		novel transcript, antisense to NCAM1	-2.3729	0.0000
63124	ENSG00000280306		TEC	-2.3728	0.0030
63123	ENSG00000271192		novel transcript	-2.3722	0.0000
63122	ENSG00000232448		novel transcript	-2.3721	0.0000
63121	ENSG00000228976	SUMO2P8	SUMO2 pseudogene 8	-2.3716	0.0026
63120	ENSG00000163273	NPPC	natriuretic peptide C	-2.3715	0.0000
63119	ENSG00000183307	TMEM121B	transmembrane protein 121B	-2.3712	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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