SHOGoiN Cell Methylome: GSM2773771
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773771 Profile download | 7020000000000000000000 | Sequence Read Archive | SRP074598 | SRP074598_M398 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | Blastocyst | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000206931 | RNU6-1042P | RNA, U6 small nuclear 1042, pseudogene | 3.2076 | 0.0000 |
| 2 | ENSG00000227134 | orthodenticle homeobox 2 (OTX2) pseudogene | 3.1699 | 0.0000 | |
| 3 | ENSG00000227692 | MED28P3 | mediator complex subunit 28 pseudogene 3 | 3.0000 | 0.0000 |
| 4 | ENSG00000233359 | novel transcript | 3.0000 | 0.0000 | |
| 5 | ENSG00000229638 | RPL4P4 | ribosomal protein L4 pseudogene 4 | 2.9760 | 0.0000 |
| 6 | ENSG00000236185 | HNRNPDLP3 | HNRNPDL pseudogene 3 | 2.9037 | 0.0000 |
| 7 | ENSG00000186119 | OR5D18 | olfactory receptor family 5 subfamily D member 18 | 2.8074 | 0.0000 |
| 8 | ENSG00000255196 | OR4A17P | olfactory receptor family 4 subfamily A member 17 pseudogene | 2.8074 | 0.0000 |
| 9 | ENSG00000256361 | glycine cleavage system protein H (aminomethyl carrier) (GCSH) | 2.8074 | 0.0000 | |
| 10 | ENSG00000279395 | OR5L1 | olfactory receptor family 5 subfamily L member 1 (gene/pseudogene) | 2.8074 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000170469 | SPATA24 | spermatogenesis associated 24 | -2.4598 | 0.0000 |
| 63340 | ENSG00000269883 | novel transcript, antisense to ZDHHC22 | -2.4595 | 0.0000 | |
| 63339 | ENSG00000104044 | OCA2 | OCA2 melanosomal transmembrane protein | -2.4592 | 0.0000 |
| 63338 | ENSG00000154654 | NCAM2 | neural cell adhesion molecule 2 | -2.4591 | 0.0000 |
| 63337 | ENSG00000227666 | CYCSP24 | CYCS pseudogene 24 | -2.4588 | 0.0000 |
| 63336 | ENSG00000254102 | novel transcript | -2.4587 | 0.0000 | |
| 63335 | ENSG00000165606 | DRGX | dorsal root ganglia homeobox | -2.4574 | 0.0000 |
| 63334 | ENSG00000231588 | SHQ1P1 | SHQ1, H/ACA ribonucleoprotein assembly factor pseudogene 1 | -2.4572 | 0.0000 |
| 63333 | ENSG00000187372 | PCDHB13 | protocadherin beta 13 | -2.4550 | 0.0000 |
| 63332 | ENSG00000168564 | CDKN2AIP | CDKN2A interacting protein | -2.4550 | 0.0000 |
