Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773771

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773771


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M398Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206931 RNU6-1042P RNA, U6 small nuclear 1042, pseudogene 3.2076 0.0000
2 ENSG00000227134 OTX2P2 OTX2 pseudogene 2 3.1699 0.0000
3 ENSG00000227692 MED28P3 mediator complex subunit 28 pseudogene 3 3.0000 0.0000
4 ENSG00000233359 novel transcript 3.0000 0.0000
5 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 2.9760 0.0000
6 ENSG00000236185 HNRNPDLP3 HNRNPDL pseudogene 3 2.9037 0.0000
7 ENSG00000186119 OR5D18 olfactory receptor family 5 subfamily D member 18 2.8074 0.0000
8 ENSG00000255196 OR4A17P olfactory receptor family 4 subfamily A member 17 pseudogene 2.8074 0.0000
9 ENSG00000256361 glycine cleavage system protein H (aminomethyl carrier) (GCSH) 2.8074 0.0000
10 ENSG00000279395 OR5L1 olfactory receptor family 5 subfamily L member 1 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000162676 GFI1 growth factor independent 1 transcriptional repressor -2.3738 0.0000
63127 ENSG00000182521 TBPL2 TATA-box binding protein like 2 -2.3734 0.0000
63126 ENSG00000280353 TEC -2.3732 0.0000
63125 ENSG00000247416 novel transcript, antisense to NCAM1 -2.3729 0.0000
63124 ENSG00000280306 TEC -2.3728 0.0030
63123 ENSG00000271192 novel transcript -2.3722 0.0000
63122 ENSG00000232448 novel transcript -2.3721 0.0000
63121 ENSG00000228976 SUMO2P8 SUMO2 pseudogene 8 -2.3716 0.0026
63120 ENSG00000163273 NPPC natriuretic peptide C -2.3715 0.0000
63119 ENSG00000183307 TMEM121B transmembrane protein 121B -2.3712 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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