Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773771
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773771
Profile download
7020000000000000000000
Sequence Read Archive
SRP074598
SRP074598_M398
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
Blastocyst
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000206931
RNU6-1042P
RNA, U6 small nuclear 1042, pseudogene
3.2076
0.0000
2
ENSG00000227134
OTX2P2
OTX2 pseudogene 2
3.1699
0.0000
3
ENSG00000227692
MED28P3
mediator complex subunit 28 pseudogene 3
3.0000
0.0000
4
ENSG00000233359
novel transcript
3.0000
0.0000
5
ENSG00000229638
RPL4P4
ribosomal protein L4 pseudogene 4
2.9760
0.0000
6
ENSG00000236185
HNRNPDLP3
HNRNPDL pseudogene 3
2.9037
0.0000
7
ENSG00000186119
OR5D18
olfactory receptor family 5 subfamily D member 18
2.8074
0.0000
8
ENSG00000255196
OR4A17P
olfactory receptor family 4 subfamily A member 17 pseudogene
2.8074
0.0000
9
ENSG00000256361
glycine cleavage system protein H (aminomethyl carrier) (GCSH)
2.8074
0.0000
10
ENSG00000279395
OR5L1
olfactory receptor family 5 subfamily L member 1
2.8074
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000162676
GFI1
growth factor independent 1 transcriptional repressor
-2.3738
0.0000
63127
ENSG00000182521
TBPL2
TATA-box binding protein like 2
-2.3734
0.0000
63126
ENSG00000280353
TEC
-2.3732
0.0000
63125
ENSG00000247416
novel transcript, antisense to NCAM1
-2.3729
0.0000
63124
ENSG00000280306
TEC
-2.3728
0.0030
63123
ENSG00000271192
novel transcript
-2.3722
0.0000
63122
ENSG00000232448
novel transcript
-2.3721
0.0000
63121
ENSG00000228976
SUMO2P8
SUMO2 pseudogene 8
-2.3716
0.0026
63120
ENSG00000163273
NPPC
natriuretic peptide C
-2.3715
0.0000
63119
ENSG00000183307
TMEM121B
transmembrane protein 121B
-2.3712
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...