SHOGoiN Cell Methylome: GSM2773771

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773771


Profile download
7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M398Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206931 RNU6-1042P RNA, U6 small nuclear 1042, pseudogene 3.2076 0.0000
2 ENSG00000227134 orthodenticle homeobox 2 (OTX2) pseudogene 3.1699 0.0000
3 ENSG00000227692 MED28P3 mediator complex subunit 28 pseudogene 3 3.0000 0.0000
4 ENSG00000233359 novel transcript 3.0000 0.0000
5 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 2.9760 0.0000
6 ENSG00000236185 HNRNPDLP3 HNRNPDL pseudogene 3 2.9037 0.0000
7 ENSG00000186119 OR5D18 olfactory receptor family 5 subfamily D member 18 2.8074 0.0000
8 ENSG00000255196 OR4A17P olfactory receptor family 4 subfamily A member 17 pseudogene 2.8074 0.0000
9 ENSG00000256361 glycine cleavage system protein H (aminomethyl carrier) (GCSH) 2.8074 0.0000
10 ENSG00000279395 OR5L1 olfactory receptor family 5 subfamily L member 1 (gene/pseudogene) 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000170469 SPATA24 spermatogenesis associated 24 -2.4598 0.0000
63340 ENSG00000269883 novel transcript, antisense to ZDHHC22 -2.4595 0.0000
63339 ENSG00000104044 OCA2 OCA2 melanosomal transmembrane protein -2.4592 0.0000
63338 ENSG00000154654 NCAM2 neural cell adhesion molecule 2 -2.4591 0.0000
63337 ENSG00000227666 CYCSP24 CYCS pseudogene 24 -2.4588 0.0000
63336 ENSG00000254102 novel transcript -2.4587 0.0000
63335 ENSG00000165606 DRGX dorsal root ganglia homeobox -2.4574 0.0000
63334 ENSG00000231588 SHQ1P1 SHQ1, H/ACA ribonucleoprotein assembly factor pseudogene 1 -2.4572 0.0000
63333 ENSG00000187372 PCDHB13 protocadherin beta 13 -2.4550 0.0000
63332 ENSG00000168564 CDKN2AIP CDKN2A interacting protein -2.4550 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...