Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773772

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773772


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M399Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000243695 TGF beta-inducible nuclear protein 1 (TINP1) pseudogene 2.8074 0.0000
2 ENSG00000270074 novel transcript 2.8074 0.0000
3 ENSG00000277684 novel transcript, antisense to RB1 2.7430 0.0000
4 ENSG00000273035 novel transcript, sense intronic to MAP4K3 2.6462 0.0000
5 ENSG00000230435 novel transcript 2.6396 0.0000
6 ENSG00000199575 SNORD114-1 small nucleolar RNA, C/D box 114-1 2.5850 0.0002
7 ENSG00000200823 SNORD114-2 small nucleolar RNA, C/D box 114-2 2.5850 0.0002
8 ENSG00000242635 RPS14P7 ribosomal protein S14 pseudogene 7 2.5850 0.0002
9 ENSG00000236243 RPL6P29 ribosomal protein L6 pseudogene 29 2.4534 0.0000
10 ENSG00000214190 RNF152P1 ring finger protein 152 pseudogene 1 2.4318 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000173376 NDNF neuron derived neurotrophic factor -2.2037 0.0000
63127 ENSG00000258728 novel protein (GALT-IL11RA readthrough) -2.2036 0.0000
63126 ENSG00000230454 novel transcript -2.2034 0.0000
63125 ENSG00000273313 RBAKDN RBAK downstream neighbor -2.2028 0.0000
63124 ENSG00000238942 SNORD2 small nucleolar RNA, C/D box 2 -2.2024 0.0000
63123 ENSG00000238113 LINC01410 long intergenic non-protein coding RNA 1410 -2.2019 0.0000
63122 ENSG00000121542 SEC22A SEC22 homolog A, vesicle trafficking protein -2.2018 0.0000
63121 ENSG00000251897 RNU6-916P RNA, U6 small nuclear 916, pseudogene -2.2013 0.0000
63120 ENSG00000251864 Y RNA -2.2010 0.0002
63119 ENSG00000163714 U2SURP U2 snRNP associated SURP domain containing -2.2000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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