SHOGoiN Cell Methylome: GSM2773772

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773772


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7020000000000000000000Sequence Read ArchiveSRP074598SRP074598_M399Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000243695 TGF beta-inducible nuclear protein 1 (TINP1) pseudogene 2.8074 0.0000
2 ENSG00000270074 novel transcript 2.8074 0.0000
3 ENSG00000277684 novel transcript, antisense to RB1 2.7430 0.0000
4 ENSG00000273035 novel transcript, sense intronic to MAP4K3 2.6462 0.0000
5 ENSG00000230435 novel transcript 2.6396 0.0000
6 ENSG00000199575 SNORD114-1 small nucleolar RNA, C/D box 114-1 2.5850 0.0002
7 ENSG00000200823 SNORD114-2 small nucleolar RNA, C/D box 114-2 2.5850 0.0002
8 ENSG00000242635 RPS14P7 ribosomal protein S14 pseudogene 7 2.5850 0.0002
9 ENSG00000236243 RPL6P29 ribosomal protein L6 pseudogene 29 2.4534 0.0000
10 ENSG00000214190 RNF152P1 ring finger protein 152 pseudogene 1 2.4318 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000180537 RNF182 ring finger protein 182 -2.2831 0.0000
63340 ENSG00000251450 RASGRF2-AS1 RASGRF2 antisense RNA 1 -2.2831 0.0000
63339 ENSG00000279751 novel transcript -2.2822 0.0000
63338 ENSG00000272405 novel transcript, antisense to BCAN -2.2818 0.0000
63337 ENSG00000240912 histone cluster 1 pseudogene -2.2811 0.0000
63336 ENSG00000229951 novel transcript, antisense to FOSL2 -2.2807 0.0000
63335 ENSG00000264563 MIR4633 microRNA 4633 -2.2805 0.0000
63334 ENSG00000225264 ZNRF2P2 zinc and ring finger 2 pseudogene 2 -2.2802 0.0000
63333 ENSG00000248367 novel transcript -2.2800 0.0000
63332 ENSG00000257048 LINC02417 long intergenic non-protein coding RNA 2417 -2.2800 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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