SHOGoiN Cell Methylome: GSM2773773

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773773


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M400Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200879 SNORD14E small nucleolar RNA, C/D box 14E 10.4578 0.0000
2 ENSG00000213269 ribosomal protein S6 (RPS6) pseudogene 10.0754 0.0000
3 ENSG00000230204 FTH1P5 ferritin heavy chain 1 pseudogene 5 8.5774 0.0000
4 ENSG00000215030 RPL13P12 ribosomal protein L13 pseudogene 12 8.5536 0.0000
5 ENSG00000254984 FTLP6 ferritin light chain pseudogene 6 8.4100 0.0000
6 ENSG00000232573 RPL3P4 ribosomal protein L3 pseudogene 4 8.3944 0.0000
7 ENSG00000231684 EIF1P3 eukaryotic translation initiation factor 1 pseudogene 3 8.3919 0.0000
8 ENSG00000275454 novel transcript, antisense to IMP3 8.3366 0.0000
9 ENSG00000242299 ribosomal protein S18 (RPS18) pseudogene 8.2822 0.0000
10 ENSG00000240409 MTATP8P1 MT-ATP8 pseudogene 1 8.2724 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000274940 MIR8083 microRNA 8083 -1.0000 0.0000
63340 ENSG00000274915 NA -1.0000 0.0000
63339 ENSG00000274884 NA -1.0000 0.0000
63338 ENSG00000274840 novel transcript -1.0000 0.0288
63337 ENSG00000274833 novel transcript -1.0000 0.0000
63336 ENSG00000274822 MIR6762 microRNA 6762 -1.0000 0.0000
63335 ENSG00000274813 immunoglobulin lambda variable 5-48 (non-functional) (IGLV5-48) pseudogene -1.0000 0.0000
63334 ENSG00000274808 TBC1D3B TBC1 domain family member 3B -1.0000 0.0008
63333 ENSG00000274755 NA -1.0000 0.0288
63332 ENSG00000274751 novel transcript, antisense to UBE2I -1.0000 0.0008

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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