Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773773

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773773


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M400Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200879 SNORD14E small nucleolar RNA, C/D box 14E 10.4578 0.0000
2 ENSG00000213269 RPS6P26 ribosomal protein S6 pseudogene 26 10.0754 0.0000
3 ENSG00000230204 FTH1P5 ferritin heavy chain 1 pseudogene 5 8.5774 0.0000
4 ENSG00000215030 RPL13P12 ribosomal protein L13 pseudogene 12 8.5536 0.0000
5 ENSG00000254984 FTLP6 ferritin light chain pseudogene 6 8.4100 0.0000
6 ENSG00000232573 RPL3P4 ribosomal protein L3 pseudogene 4 8.3944 0.0000
7 ENSG00000231684 EIF1P3 eukaryotic translation initiation factor 1 pseudogene 3 8.3919 0.0000
8 ENSG00000275454 novel transcript, antisense to IMP3 8.3366 0.0000
9 ENSG00000242299 ribosomal protein S18 (RPS18) pseudogene 8.2822 0.0000
10 ENSG00000240409 MTATP8P1 MT-ATP8 pseudogene 1 8.2724 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000267510 novel transcript, antisense to ZNF699 -1.0000 0.0000
63127 ENSG00000267508 ZNF285 zinc finger protein 285 -1.0000 0.0000
63126 ENSG00000267489 LINC01837 long intergenic non-protein coding RNA 1837 -1.0000 0.0000
63125 ENSG00000267471 member RAS oncogene family (RAB9) pseudogene -1.0000 0.0008
63124 ENSG00000267453 CLEC4O C-type lectin domain family 4 member O -1.0000 0.0288
63123 ENSG00000267432 DNAH17-AS1 DNAH17 antisense RNA 1 -1.0000 0.0000
63122 ENSG00000267412 novel transcript, sense intronic to GNG7 -1.0000 0.0000
63121 ENSG00000267399 novel transcript -1.0000 0.0000
63120 ENSG00000267391 MIR122HG MIR122 host gene -1.0000 0.0288
63119 ENSG00000267389 ladinin 1 (LAD1) pseudogene -1.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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