Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773774

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773774 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M401	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000255633	MTRNR2L9	MT-RNR2 like 9	9.0201	0.0000
2	ENSG00000213269	RPS6P26	ribosomal protein S6 pseudogene 26	9.0008	0.0000
3	ENSG00000215030	RPL13P12	ribosomal protein L13 pseudogene 12	8.5041	0.0000
4	ENSG00000250321		pseudogene similar to part of ribosomal protein S17 (RPS17)	8.4953	0.0000
5	ENSG00000271150		major histocompatibility complex, class I, F (HLA-F) pseudogene	8.1623	0.0000
6	ENSG00000206637	SNORA70H	small nucleolar RNA, H/ACA box 70H	8.1315	0.0000
7	ENSG00000238003	RPL10P4	ribosomal protein L10 pseudogene 4	8.1315	0.0000
8	ENSG00000198744	MTCO3P12	MT-CO3 pseudogene 12	8.0379	0.0000
9	ENSG00000240409	MTATP8P1	MT-ATP8 pseudogene 1	8.0296	0.0000
10	ENSG00000248527	MTATP6P1	MT-ATP6 pseudogene 1	8.0078	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000267382		glutamate decarboxylase 1-like pseudogene	-1.0000	0.0007
63127	ENSG00000267376	ATP5MGP6	ATP synthase membrane subunit g pseudogene 6	-1.0000	0.0000
63126	ENSG00000267372		novel transcript	-1.0000	0.0000
63125	ENSG00000267366		novel transcript, antisense C18orf1	-1.0000	0.0007
63124	ENSG00000267341		novel transcript, antisense to TNFRSF11A	-1.0000	0.0266
63123	ENSG00000267298		novel transcript, sense intronic to ZSCAN5A	-1.0000	0.0266
63122	ENSG00000267292		WD repeat domain, phosphoinositide interacting 2 (WIPI2) pseudogene	-1.0000	0.0000
63121	ENSG00000267273		novel transcript	-1.0000	0.0000
63120	ENSG00000267257		novel transcript, antisense to ALPK2	-1.0000	0.0000
63119	ENSG00000267226	MALT1-AS1	MALT1 antisense RNA 1	-1.0000	0.0007

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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