SHOGoiN Cell Methylome: GSM2773774
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773774 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M401 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000255633 | MTRNR2L9 | MT-RNR2 like 9 | 9.0201 | 0.0000 |
| 2 | ENSG00000213269 | ribosomal protein S6 (RPS6) pseudogene | 9.0008 | 0.0000 | |
| 3 | ENSG00000215030 | RPL13P12 | ribosomal protein L13 pseudogene 12 | 8.5041 | 0.0000 |
| 4 | ENSG00000250321 | pseudogene similar to part of ribosomal protein S17 (RPS17) | 8.4953 | 0.0000 | |
| 5 | ENSG00000271150 | major histocompatibility complex, class I, F (HLA-F) pseudogene | 8.1623 | 0.0000 | |
| 6 | ENSG00000206637 | SNORA70H | small nucleolar RNA, H/ACA box 70H | 8.1315 | 0.0000 |
| 7 | ENSG00000238003 | RPL10P4 | ribosomal protein L10 pseudogene 4 | 8.1315 | 0.0000 |
| 8 | ENSG00000198744 | MTCO3P12 | MT-CO3 pseudogene 12 | 8.0379 | 0.0000 |
| 9 | ENSG00000240409 | MTATP8P1 | MT-ATP8 pseudogene 1 | 8.0296 | 0.0000 |
| 10 | ENSG00000248527 | MTATP6P1 | MT-ATP6 pseudogene 1 | 8.0078 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000275458 | MIR6809 | microRNA 6809 | -1.0000 | 0.0266 |
| 63340 | ENSG00000275450 | novel transcript | -1.0000 | 0.0000 | |
| 63339 | ENSG00000275449 | MIR6859-3 | microRNA 6859-3 | -1.0000 | 0.0266 |
| 63338 | ENSG00000275445 | novel transcript, antisense to C16orf52 | -1.0000 | 0.0007 | |
| 63337 | ENSG00000275387 | inter-alpha-trypsin inhibitor heavy chain family, member 6 (ITIH6) pseudogene | -1.0000 | 0.0266 | |
| 63336 | ENSG00000275359 | NA | -1.0000 | 0.0266 | |
| 63335 | ENSG00000275358 | novel transcript | -1.0000 | 0.0000 | |
| 63334 | ENSG00000275320 | tRNA methyltransferase 12 homolog (S. cerevisiae) (TRMT12) pseudogene | -1.0000 | 0.0266 | |
| 63333 | ENSG00000275315 | nuclear pore complex interacting protein family, member B7 (NPIPB7) pseudogene | -1.0000 | 0.0007 | |
| 63332 | ENSG00000275285 | novel transcript | -1.0000 | 0.0000 |
