Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773774

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773774


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M401Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 9.0201 0.0000
2 ENSG00000213269 RPS6P26 ribosomal protein S6 pseudogene 26 9.0008 0.0000
3 ENSG00000215030 RPL13P12 ribosomal protein L13 pseudogene 12 8.5041 0.0000
4 ENSG00000250321 pseudogene similar to part of ribosomal protein S17 (RPS17) 8.4953 0.0000
5 ENSG00000271150 major histocompatibility complex, class I, F (HLA-F) pseudogene 8.1623 0.0000
6 ENSG00000206637 SNORA70H small nucleolar RNA, H/ACA box 70H 8.1315 0.0000
7 ENSG00000238003 RPL10P4 ribosomal protein L10 pseudogene 4 8.1315 0.0000
8 ENSG00000198744 MTCO3P12 MT-CO3 pseudogene 12 8.0379 0.0000
9 ENSG00000240409 MTATP8P1 MT-ATP8 pseudogene 1 8.0296 0.0000
10 ENSG00000248527 MTATP6P1 MT-ATP6 pseudogene 1 8.0078 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000267382 glutamate decarboxylase 1-like pseudogene -1.0000 0.0007
63127 ENSG00000267376 ATP5MGP6 ATP synthase membrane subunit g pseudogene 6 -1.0000 0.0000
63126 ENSG00000267372 novel transcript -1.0000 0.0000
63125 ENSG00000267366 novel transcript, antisense C18orf1 -1.0000 0.0007
63124 ENSG00000267341 novel transcript, antisense to TNFRSF11A -1.0000 0.0266
63123 ENSG00000267298 novel transcript, sense intronic to ZSCAN5A -1.0000 0.0266
63122 ENSG00000267292 WD repeat domain, phosphoinositide interacting 2 (WIPI2) pseudogene -1.0000 0.0000
63121 ENSG00000267273 novel transcript -1.0000 0.0000
63120 ENSG00000267257 novel transcript, antisense to ALPK2 -1.0000 0.0000
63119 ENSG00000267226 MALT1-AS1 MALT1 antisense RNA 1 -1.0000 0.0007

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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