SHOGoiN Cell Methylome: GSM2773774

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773774


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M401Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 9.0201 0.0000
2 ENSG00000213269 ribosomal protein S6 (RPS6) pseudogene 9.0008 0.0000
3 ENSG00000215030 RPL13P12 ribosomal protein L13 pseudogene 12 8.5041 0.0000
4 ENSG00000250321 pseudogene similar to part of ribosomal protein S17 (RPS17) 8.4953 0.0000
5 ENSG00000271150 major histocompatibility complex, class I, F (HLA-F) pseudogene 8.1623 0.0000
6 ENSG00000206637 SNORA70H small nucleolar RNA, H/ACA box 70H 8.1315 0.0000
7 ENSG00000238003 RPL10P4 ribosomal protein L10 pseudogene 4 8.1315 0.0000
8 ENSG00000198744 MTCO3P12 MT-CO3 pseudogene 12 8.0379 0.0000
9 ENSG00000240409 MTATP8P1 MT-ATP8 pseudogene 1 8.0296 0.0000
10 ENSG00000248527 MTATP6P1 MT-ATP6 pseudogene 1 8.0078 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000275458 MIR6809 microRNA 6809 -1.0000 0.0266
63340 ENSG00000275450 novel transcript -1.0000 0.0000
63339 ENSG00000275449 MIR6859-3 microRNA 6859-3 -1.0000 0.0266
63338 ENSG00000275445 novel transcript, antisense to C16orf52 -1.0000 0.0007
63337 ENSG00000275387 inter-alpha-trypsin inhibitor heavy chain family, member 6 (ITIH6) pseudogene -1.0000 0.0266
63336 ENSG00000275359 NA -1.0000 0.0266
63335 ENSG00000275358 novel transcript -1.0000 0.0000
63334 ENSG00000275320 tRNA methyltransferase 12 homolog (S. cerevisiae) (TRMT12) pseudogene -1.0000 0.0266
63333 ENSG00000275315 nuclear pore complex interacting protein family, member B7 (NPIPB7) pseudogene -1.0000 0.0007
63332 ENSG00000275285 novel transcript -1.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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