Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773774
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773774
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M401
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000255633
MTRNR2L9
MT-RNR2 like 9
9.0201
0.0000
2
ENSG00000213269
RPS6P26
ribosomal protein S6 pseudogene 26
9.0008
0.0000
3
ENSG00000215030
RPL13P12
ribosomal protein L13 pseudogene 12
8.5041
0.0000
4
ENSG00000250321
pseudogene similar to part of ribosomal protein S17 (RPS17)
8.4953
0.0000
5
ENSG00000271150
major histocompatibility complex, class I, F (HLA-F) pseudogene
8.1623
0.0000
6
ENSG00000206637
SNORA70H
small nucleolar RNA, H/ACA box 70H
8.1315
0.0000
7
ENSG00000238003
RPL10P4
ribosomal protein L10 pseudogene 4
8.1315
0.0000
8
ENSG00000198744
MTCO3P12
MT-CO3 pseudogene 12
8.0379
0.0000
9
ENSG00000240409
MTATP8P1
MT-ATP8 pseudogene 1
8.0296
0.0000
10
ENSG00000248527
MTATP6P1
MT-ATP6 pseudogene 1
8.0078
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000267382
glutamate decarboxylase 1-like pseudogene
-1.0000
0.0007
63127
ENSG00000267376
ATP5MGP6
ATP synthase membrane subunit g pseudogene 6
-1.0000
0.0000
63126
ENSG00000267372
novel transcript
-1.0000
0.0000
63125
ENSG00000267366
novel transcript, antisense C18orf1
-1.0000
0.0007
63124
ENSG00000267341
novel transcript, antisense to TNFRSF11A
-1.0000
0.0266
63123
ENSG00000267298
novel transcript, sense intronic to ZSCAN5A
-1.0000
0.0266
63122
ENSG00000267292
WD repeat domain, phosphoinositide interacting 2 (WIPI2) pseudogene
-1.0000
0.0000
63121
ENSG00000267273
novel transcript
-1.0000
0.0000
63120
ENSG00000267257
novel transcript, antisense to ALPK2
-1.0000
0.0000
63119
ENSG00000267226
MALT1-AS1
MALT1 antisense RNA 1
-1.0000
0.0007
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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