SHOGoiN Cell Methylome: GSM2773775
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773775 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M402 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000255633 | MTRNR2L9 | MT-RNR2 like 9 | 10.0443 | 0.0000 |
| 2 | ENSG00000215030 | RPL13P12 | ribosomal protein L13 pseudogene 12 | 8.5975 | 0.0000 |
| 3 | ENSG00000244313 | ribosomal protein S10 (RPS10) pseudogene | 8.5693 | 0.0000 | |
| 4 | ENSG00000265401 | novel transcript | 8.3695 | 0.0000 | |
| 5 | ENSG00000284135 | MIR3654 | microRNA 3654 | 8.1990 | 0.0000 |
| 6 | ENSG00000183389 | OR56A4 | olfactory receptor family 56 subfamily A member 4 | 8.0938 | 0.0000 |
| 7 | ENSG00000254831 | KRT18P58 | keratin 18 pseudogene 58 | 8.0938 | 0.0000 |
| 8 | ENSG00000240409 | MTATP8P1 | MT-ATP8 pseudogene 1 | 8.0934 | 0.0000 |
| 9 | ENSG00000204121 | ECEL1P1 | endothelin converting enzyme like 1 pseudogene 1 | 8.0839 | 0.0000 |
| 10 | ENSG00000248527 | MTATP6P1 | MT-ATP6 pseudogene 1 | 8.0699 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000265226 | MIR548AI | microRNA 548ai | -1.0000 | 0.0008 |
| 63340 | ENSG00000265168 | novel transcript, antisense to ALDOC | -1.0000 | 0.0000 | |
| 63339 | ENSG00000265148 | TSPOAP1-AS1 | TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 | -1.0000 | 0.0000 |
| 63338 | ENSG00000265126 | novel transcript, antisense to RNF112 | -1.0000 | 0.0000 | |
| 63337 | ENSG00000265096 | C1QTNF1-AS1 | C1QTNF1 antisense RNA 1 | -1.0000 | 0.0000 |
| 63336 | ENSG00000265041 | TBC1 domain family, member 29 (TBC1D29) pseudogene | -1.0000 | 0.0000 | |
| 63335 | ENSG00000264810 | MIR4441 | microRNA 4441 | -1.0000 | 0.0000 |
| 63334 | ENSG00000264785 | novel transcript, antisense to ALDH3A1 | -1.0000 | 0.0000 | |
| 63333 | ENSG00000264735 | novel transcript | -1.0000 | 0.0000 | |
| 63332 | ENSG00000264714 | KIAA0895LP1 | KIAA00895L pseudogene 1 | -1.0000 | 0.0000 |
