Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773775
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773775
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M402
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000255633
MTRNR2L9
MT-RNR2 like 9
10.0443
0.0000
2
ENSG00000215030
RPL13P12
ribosomal protein L13 pseudogene 12
8.5975
0.0000
3
ENSG00000244313
ribosomal protein S10 (RPS10) pseudogene
8.5693
0.0000
4
ENSG00000265401
novel transcript
8.3695
0.0000
5
ENSG00000284135
MIR3654
microRNA 3654
8.1990
0.0000
6
ENSG00000183389
OR56A4
olfactory receptor family 56 subfamily A member 4
8.0938
0.0000
7
ENSG00000254831
KRT18P58
keratin 18 pseudogene 58
8.0938
0.0000
8
ENSG00000240409
MTATP8P1
MT-ATP8 pseudogene 1
8.0934
0.0000
9
ENSG00000204121
ECEL1P1
endothelin converting enzyme like 1 pseudogene 1
8.0839
0.0000
10
ENSG00000248527
MTATP6P1
MT-ATP6 pseudogene 1
8.0699
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000254626
novel transcript
-1.0000
0.0000
63127
ENSG00000254620
novel transcript
-1.0000
0.0279
63126
ENSG00000254616
Zinc finger protein 628 (ZNF628) pseudogene
-1.0000
0.0008
63125
ENSG00000254605
novel transcript
-1.0000
0.0008
63124
ENSG00000254602
novel transcript, sense overlapping CLP1
-1.0000
0.0000
63123
ENSG00000254568
novel transcript
-1.0000
0.0000
63122
ENSG00000254562
LINC01493
long intergenic non-protein coding RNA 1493
-1.0000
0.0279
63121
ENSG00000254545
novel transcript
-1.0000
0.0000
63120
ENSG00000254544
PCNAP4
proliferating cell nuclear antigen pseudogene 4
-1.0000
0.0279
63119
ENSG00000254539
novel transcript
-1.0000
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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