Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773775

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773775 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M402	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000255633	MTRNR2L9	MT-RNR2 like 9	10.0443	0.0000
2	ENSG00000215030	RPL13P12	ribosomal protein L13 pseudogene 12	8.5975	0.0000
3	ENSG00000244313		ribosomal protein S10 (RPS10) pseudogene	8.5693	0.0000
4	ENSG00000265401		novel transcript	8.3695	0.0000
5	ENSG00000284135	MIR3654	microRNA 3654	8.1990	0.0000
6	ENSG00000183389	OR56A4	olfactory receptor family 56 subfamily A member 4	8.0938	0.0000
7	ENSG00000254831	KRT18P58	keratin 18 pseudogene 58	8.0938	0.0000
8	ENSG00000240409	MTATP8P1	MT-ATP8 pseudogene 1	8.0934	0.0000
9	ENSG00000204121	ECEL1P1	endothelin converting enzyme like 1 pseudogene 1	8.0839	0.0000
10	ENSG00000248527	MTATP6P1	MT-ATP6 pseudogene 1	8.0699	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000254626		novel transcript	-1.0000	0.0000
63127	ENSG00000254620		novel transcript	-1.0000	0.0279
63126	ENSG00000254616		Zinc finger protein 628 (ZNF628) pseudogene	-1.0000	0.0008
63125	ENSG00000254605		novel transcript	-1.0000	0.0008
63124	ENSG00000254602		novel transcript, sense overlapping CLP1	-1.0000	0.0000
63123	ENSG00000254568		novel transcript	-1.0000	0.0000
63122	ENSG00000254562	LINC01493	long intergenic non-protein coding RNA 1493	-1.0000	0.0279
63121	ENSG00000254545		novel transcript	-1.0000	0.0000
63120	ENSG00000254544	PCNAP4	proliferating cell nuclear antigen pseudogene 4	-1.0000	0.0279
63119	ENSG00000254539		novel transcript	-1.0000	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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