SHOGoiN Cell Methylome: GSM2773775

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773775


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M402Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 10.0443 0.0000
2 ENSG00000215030 RPL13P12 ribosomal protein L13 pseudogene 12 8.5975 0.0000
3 ENSG00000244313 ribosomal protein S10 (RPS10) pseudogene 8.5693 0.0000
4 ENSG00000265401 novel transcript 8.3695 0.0000
5 ENSG00000284135 MIR3654 microRNA 3654 8.1990 0.0000
6 ENSG00000183389 OR56A4 olfactory receptor family 56 subfamily A member 4 8.0938 0.0000
7 ENSG00000254831 KRT18P58 keratin 18 pseudogene 58 8.0938 0.0000
8 ENSG00000240409 MTATP8P1 MT-ATP8 pseudogene 1 8.0934 0.0000
9 ENSG00000204121 ECEL1P1 endothelin converting enzyme like 1 pseudogene 1 8.0839 0.0000
10 ENSG00000248527 MTATP6P1 MT-ATP6 pseudogene 1 8.0699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000265226 MIR548AI microRNA 548ai -1.0000 0.0008
63340 ENSG00000265168 novel transcript, antisense to ALDOC -1.0000 0.0000
63339 ENSG00000265148 TSPOAP1-AS1 TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 -1.0000 0.0000
63338 ENSG00000265126 novel transcript, antisense to RNF112 -1.0000 0.0000
63337 ENSG00000265096 C1QTNF1-AS1 C1QTNF1 antisense RNA 1 -1.0000 0.0000
63336 ENSG00000265041 TBC1 domain family, member 29 (TBC1D29) pseudogene -1.0000 0.0000
63335 ENSG00000264810 MIR4441 microRNA 4441 -1.0000 0.0000
63334 ENSG00000264785 novel transcript, antisense to ALDH3A1 -1.0000 0.0000
63333 ENSG00000264735 novel transcript -1.0000 0.0000
63332 ENSG00000264714 KIAA0895LP1 KIAA00895L pseudogene 1 -1.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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