Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773776

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773776 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M403	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000213269	RPS6P26	ribosomal protein S6 pseudogene 26	8.7914	0.0000
2	ENSG00000250405		splicing factor 4 (SF4) pseudogene	8.6707	0.0000
3	ENSG00000284135	MIR3654	microRNA 3654	8.5261	0.0000
4	ENSG00000244313		ribosomal protein S10 (RPS10) pseudogene	8.4716	0.0000
5	ENSG00000254831	KRT18P58	keratin 18 pseudogene 58	8.3941	0.0000
6	ENSG00000265095	FTLP12	ferritin light chain pseudogene 12	8.3804	0.0000
7	ENSG00000187475	H1-6	H1.6 linker histone, cluster member	8.3153	0.0000
8	ENSG00000215030	RPL13P12	ribosomal protein L13 pseudogene 12	8.3153	0.0000
9	ENSG00000251835	RNU6ATAC32P	RNA, U6atac small nuclear 32, pseudogene	8.1999	0.0000
10	ENSG00000248223		novel transcript	8.1189	0.0007

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000259789		novel transcript	-1.0000	0.0008
63127	ENSG00000259764	PCSK6-AS1	PCSK6 antisense RNA 1	-1.0000	0.0000
63126	ENSG00000259759		novel transcript	-1.0000	0.0008
63125	ENSG00000259753		novel protein	-1.0000	0.0000
63124	ENSG00000259730		novel transcript	-1.0000	0.0279
63122	ENSG00000259666	LINGO1-AS1	LINGO1 antisense RNA 1	-1.0000	0.0000
63120	ENSG00000259539		novel transcript	-1.0000	0.0000
63119	ENSG00000259519		novel transcript, antisense to SHF	-1.0000	0.0000
10	ENSG00000248223		novel transcript	8.1189	0.0007
9	ENSG00000251835	RNU6ATAC32P	RNA, U6atac small nuclear 32, pseudogene	8.1999	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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