Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773776
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773776
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M403
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000213269
RPS6P26
ribosomal protein S6 pseudogene 26
8.7914
0.0000
2
ENSG00000250405
splicing factor 4 (SF4) pseudogene
8.6707
0.0000
3
ENSG00000284135
MIR3654
microRNA 3654
8.5261
0.0000
4
ENSG00000244313
ribosomal protein S10 (RPS10) pseudogene
8.4716
0.0000
5
ENSG00000254831
KRT18P58
keratin 18 pseudogene 58
8.3941
0.0000
6
ENSG00000265095
FTLP12
ferritin light chain pseudogene 12
8.3804
0.0000
7
ENSG00000187475
H1-6
H1.6 linker histone, cluster member
8.3153
0.0000
8
ENSG00000215030
RPL13P12
ribosomal protein L13 pseudogene 12
8.3153
0.0000
9
ENSG00000251835
RNU6ATAC32P
RNA, U6atac small nuclear 32, pseudogene
8.1999
0.0000
10
ENSG00000248223
novel transcript
8.1189
0.0007
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000259789
novel transcript
-1.0000
0.0008
63127
ENSG00000259764
PCSK6-AS1
PCSK6 antisense RNA 1
-1.0000
0.0000
63126
ENSG00000259759
novel transcript
-1.0000
0.0008
63125
ENSG00000259753
novel protein
-1.0000
0.0000
63124
ENSG00000259730
novel transcript
-1.0000
0.0279
63122
ENSG00000259666
LINGO1-AS1
LINGO1 antisense RNA 1
-1.0000
0.0000
63120
ENSG00000259539
novel transcript
-1.0000
0.0000
63119
ENSG00000259519
novel transcript, antisense to SHF
-1.0000
0.0000
10
ENSG00000248223
novel transcript
8.1189
0.0007
9
ENSG00000251835
RNU6ATAC32P
RNA, U6atac small nuclear 32, pseudogene
8.1999
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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