SHOGoiN Cell Methylome: GSM2773776
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773776 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M403 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000213269 | ribosomal protein S6 (RPS6) pseudogene | 8.7914 | 0.0000 | |
| 2 | ENSG00000250405 | splicing factor 4 (SF4) pseudogene | 8.6707 | 0.0000 | |
| 3 | ENSG00000284135 | MIR3654 | microRNA 3654 | 8.5261 | 0.0000 |
| 4 | ENSG00000244313 | ribosomal protein S10 (RPS10) pseudogene | 8.4716 | 0.0000 | |
| 5 | ENSG00000254831 | KRT18P58 | keratin 18 pseudogene 58 | 8.3941 | 0.0000 |
| 6 | ENSG00000265095 | FTLP12 | ferritin light chain pseudogene 12 | 8.3804 | 0.0000 |
| 7 | ENSG00000187475 | HIST1H1T | histone cluster 1 H1 family member t | 8.3153 | 0.0000 |
| 8 | ENSG00000215030 | RPL13P12 | ribosomal protein L13 pseudogene 12 | 8.3153 | 0.0000 |
| 9 | ENSG00000251835 | RNU6ATAC32P | RNA, U6atac small nuclear 32, pseudogene | 8.1999 | 0.0000 |
| 10 | ENSG00000248223 | novel transcript | 8.1189 | 0.0007 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000269050 | novel transcript, antisense to RINL | -1.0000 | 0.0000 | |
| 63340 | ENSG00000268938 | novel transcript, antisense to FKBP8 | -1.0000 | 0.0000 | |
| 63339 | ENSG00000268912 | novel transcript | -1.0000 | 0.0279 | |
| 63338 | ENSG00000268729 | novel transcript, antisense to BRSK1 | -1.0000 | 0.0000 | |
| 63337 | ENSG00000268621 | IGFL2-AS1 | IGFL2 antisense RNA 1 | -1.0000 | 0.0008 |
| 63336 | ENSG00000268589 | testis expressed 264 (TEX264) pseudogene | -1.0000 | 0.0000 | |
| 63334 | ENSG00000268536 | novel transcript | -1.0000 | 0.0000 | |
| 63333 | ENSG00000268529 | CYP2T3P | cytochrome P450 family 2 subfamily T member 3, pseudogene | -1.0000 | 0.0279 |
| 63332 | ENSG00000268473 | chloride intracellular channel 1 (CLIC1) pseudogene | -1.0000 | 0.0000 | |
| 10 | ENSG00000248223 | novel transcript | 8.1189 | 0.0007 |
