SHOGoiN Cell Methylome: GSM2773776

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773776


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M403Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213269 ribosomal protein S6 (RPS6) pseudogene 8.7914 0.0000
2 ENSG00000250405 splicing factor 4 (SF4) pseudogene 8.6707 0.0000
3 ENSG00000284135 MIR3654 microRNA 3654 8.5261 0.0000
4 ENSG00000244313 ribosomal protein S10 (RPS10) pseudogene 8.4716 0.0000
5 ENSG00000254831 KRT18P58 keratin 18 pseudogene 58 8.3941 0.0000
6 ENSG00000265095 FTLP12 ferritin light chain pseudogene 12 8.3804 0.0000
7 ENSG00000187475 HIST1H1T histone cluster 1 H1 family member t 8.3153 0.0000
8 ENSG00000215030 RPL13P12 ribosomal protein L13 pseudogene 12 8.3153 0.0000
9 ENSG00000251835 RNU6ATAC32P RNA, U6atac small nuclear 32, pseudogene 8.1999 0.0000
10 ENSG00000248223 novel transcript 8.1189 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000269050 novel transcript, antisense to RINL -1.0000 0.0000
63340 ENSG00000268938 novel transcript, antisense to FKBP8 -1.0000 0.0000
63339 ENSG00000268912 novel transcript -1.0000 0.0279
63338 ENSG00000268729 novel transcript, antisense to BRSK1 -1.0000 0.0000
63337 ENSG00000268621 IGFL2-AS1 IGFL2 antisense RNA 1 -1.0000 0.0008
63336 ENSG00000268589 testis expressed 264 (TEX264) pseudogene -1.0000 0.0000
63334 ENSG00000268536 novel transcript -1.0000 0.0000
63333 ENSG00000268529 CYP2T3P cytochrome P450 family 2 subfamily T member 3, pseudogene -1.0000 0.0279
63332 ENSG00000268473 chloride intracellular channel 1 (CLIC1) pseudogene -1.0000 0.0000
10 ENSG00000248223 novel transcript 8.1189 0.0007

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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