SHOGoiN Cell Methylome: GSM2773777
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773777 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M404 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000255633 | MTRNR2L9 | MT-RNR2 like 9 | 9.3758 | 0.0000 |
| 2 | ENSG00000241217 | RN7SL809P | RNA, 7SL, cytoplasmic 809, pseudogene | 9.0979 | 0.0000 |
| 3 | ENSG00000231684 | EIF1P3 | eukaryotic translation initiation factor 1 pseudogene 3 | 8.8141 | 0.0000 |
| 4 | ENSG00000284135 | MIR3654 | microRNA 3654 | 8.6835 | 0.0000 |
| 5 | ENSG00000213269 | ribosomal protein S6 (RPS6) pseudogene | 8.1929 | 0.0000 | |
| 6 | ENSG00000265401 | novel transcript | 8.1676 | 0.0000 | |
| 7 | ENSG00000265095 | FTLP12 | ferritin light chain pseudogene 12 | 8.1113 | 0.0000 |
| 8 | ENSG00000275549 | STPG3-AS1 | STPG3 antisense RNA 1 | 8.0962 | 0.0000 |
| 9 | ENSG00000240409 | MTATP8P1 | MT-ATP8 pseudogene 1 | 8.0427 | 0.0000 |
| 10 | ENSG00000166796 | LDHC | lactate dehydrogenase C | 8.0409 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000270115 | novel transcript | -1.0000 | 0.0000 | |
| 63340 | ENSG00000270112 | novel transcript, antisense to ST8SIA5 | -1.0000 | 0.0000 | |
| 63339 | ENSG00000270100 | novel transcript | -1.0000 | 0.0000 | |
| 63338 | ENSG00000270068 | novel transcript, antisense to ZNF384 | -1.0000 | 0.0000 | |
| 63336 | ENSG00000270012 | novel transcript | -1.0000 | 0.0000 | |
| 63335 | ENSG00000269956 | MKNK1-AS1 | MKNK1 antisense RNA 1 | -1.0000 | 0.0000 |
| 63334 | ENSG00000269935 | novel transcript, antisense to JPH3 | -1.0000 | 0.0000 | |
| 63333 | ENSG00000269848 | family with sequence similarity 201, member A (FAM201A) pseudogene | -1.0000 | 0.0000 | |
| 63332 | ENSG00000269752 | novel transcript, antisense UNC13A | -1.0000 | 0.0000 | |
| 10 | ENSG00000166796 | LDHC | lactate dehydrogenase C | 8.0409 | 0.0000 |
