Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773777
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773777
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M404
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000255633
MTRNR2L9
MT-RNR2 like 9
9.3758
0.0000
2
ENSG00000241217
RN7SL809P
RNA, 7SL, cytoplasmic 809, pseudogene
9.0979
0.0000
3
ENSG00000231684
EIF1P3
eukaryotic translation initiation factor 1 pseudogene 3
8.8141
0.0000
4
ENSG00000284135
MIR3654
microRNA 3654
8.6835
0.0000
5
ENSG00000213269
RPS6P26
ribosomal protein S6 pseudogene 26
8.1929
0.0000
6
ENSG00000265401
novel transcript
8.1676
0.0000
7
ENSG00000265095
FTLP12
ferritin light chain pseudogene 12
8.1113
0.0000
8
ENSG00000275549
STPG3-AS1
STPG3 antisense RNA 1
8.0962
0.0000
9
ENSG00000240409
MTATP8P1
MT-ATP8 pseudogene 1
8.0427
0.0000
10
ENSG00000166796
LDHC
lactate dehydrogenase C
8.0409
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000261129
novel transcript
-1.0000
0.0282
63127
ENSG00000261122
LINC02167
long intergenic non-protein coding RNA 2167
-1.0000
0.0000
63126
ENSG00000261103
novel transcript, antisense to CDH13
-1.0000
0.0008
63125
ENSG00000261087
ZNNT1
ZNF706 neighboring transcript 1
-1.0000
0.0000
63124
ENSG00000261072
hydroxyacyl-CoA dehydrogenase (HADH) pseudogene
-1.0000
0.0282
63123
ENSG00000261030
novel transcript
-1.0000
0.0000
63122
ENSG00000261026
novel transcript, overlapping to EGR3
-1.0000
0.0008
63121
ENSG00000260930
LINC01416
long intergenic non-protein coding RNA 1416
-1.0000
0.0282
63120
ENSG00000260919
novel transcript, antisense to CLK3
-1.0000
0.0008
63119
ENSG00000260894
novel transcript, antisense to FAM65A
-1.0000
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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