Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773777

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773777 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M404	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000255633	MTRNR2L9	MT-RNR2 like 9	9.3758	0.0000
2	ENSG00000241217	RN7SL809P	RNA, 7SL, cytoplasmic 809, pseudogene	9.0979	0.0000
3	ENSG00000231684	EIF1P3	eukaryotic translation initiation factor 1 pseudogene 3	8.8141	0.0000
4	ENSG00000284135	MIR3654	microRNA 3654	8.6835	0.0000
5	ENSG00000213269	RPS6P26	ribosomal protein S6 pseudogene 26	8.1929	0.0000
6	ENSG00000265401		novel transcript	8.1676	0.0000
7	ENSG00000265095	FTLP12	ferritin light chain pseudogene 12	8.1113	0.0000
8	ENSG00000275549	STPG3-AS1	STPG3 antisense RNA 1	8.0962	0.0000
9	ENSG00000240409	MTATP8P1	MT-ATP8 pseudogene 1	8.0427	0.0000
10	ENSG00000166796	LDHC	lactate dehydrogenase C	8.0409	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000261129		novel transcript	-1.0000	0.0282
63127	ENSG00000261122	LINC02167	long intergenic non-protein coding RNA 2167	-1.0000	0.0000
63126	ENSG00000261103		novel transcript, antisense to CDH13	-1.0000	0.0008
63125	ENSG00000261087	ZNNT1	ZNF706 neighboring transcript 1	-1.0000	0.0000
63124	ENSG00000261072		hydroxyacyl-CoA dehydrogenase (HADH) pseudogene	-1.0000	0.0282
63123	ENSG00000261030		novel transcript	-1.0000	0.0000
63122	ENSG00000261026		novel transcript, overlapping to EGR3	-1.0000	0.0008
63121	ENSG00000260930	LINC01416	long intergenic non-protein coding RNA 1416	-1.0000	0.0282
63120	ENSG00000260919		novel transcript, antisense to CLK3	-1.0000	0.0008
63119	ENSG00000260894		novel transcript, antisense to FAM65A	-1.0000	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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