Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773777

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773777


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M404Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 9.3758 0.0000
2 ENSG00000241217 RN7SL809P RNA, 7SL, cytoplasmic 809, pseudogene 9.0979 0.0000
3 ENSG00000231684 EIF1P3 eukaryotic translation initiation factor 1 pseudogene 3 8.8141 0.0000
4 ENSG00000284135 MIR3654 microRNA 3654 8.6835 0.0000
5 ENSG00000213269 RPS6P26 ribosomal protein S6 pseudogene 26 8.1929 0.0000
6 ENSG00000265401 novel transcript 8.1676 0.0000
7 ENSG00000265095 FTLP12 ferritin light chain pseudogene 12 8.1113 0.0000
8 ENSG00000275549 STPG3-AS1 STPG3 antisense RNA 1 8.0962 0.0000
9 ENSG00000240409 MTATP8P1 MT-ATP8 pseudogene 1 8.0427 0.0000
10 ENSG00000166796 LDHC lactate dehydrogenase C 8.0409 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000261129 novel transcript -1.0000 0.0282
63127 ENSG00000261122 LINC02167 long intergenic non-protein coding RNA 2167 -1.0000 0.0000
63126 ENSG00000261103 novel transcript, antisense to CDH13 -1.0000 0.0008
63125 ENSG00000261087 ZNNT1 ZNF706 neighboring transcript 1 -1.0000 0.0000
63124 ENSG00000261072 hydroxyacyl-CoA dehydrogenase (HADH) pseudogene -1.0000 0.0282
63123 ENSG00000261030 novel transcript -1.0000 0.0000
63122 ENSG00000261026 novel transcript, overlapping to EGR3 -1.0000 0.0008
63121 ENSG00000260930 LINC01416 long intergenic non-protein coding RNA 1416 -1.0000 0.0282
63120 ENSG00000260919 novel transcript, antisense to CLK3 -1.0000 0.0008
63119 ENSG00000260894 novel transcript, antisense to FAM65A -1.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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