Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773778

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773778 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M405	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000255633	MTRNR2L9	MT-RNR2 like 9	9.5124	0.0000
2	ENSG00000284135	MIR3654	microRNA 3654	8.9877	0.0000
3	ENSG00000213269	RPS6P26	ribosomal protein S6 pseudogene 26	8.7666	0.0000
4	ENSG00000215030	RPL13P12	ribosomal protein L13 pseudogene 12	8.3731	0.0000
5	ENSG00000244313		ribosomal protein S10 (RPS10) pseudogene	8.2857	0.0000
6	ENSG00000231684	EIF1P3	eukaryotic translation initiation factor 1 pseudogene 3	8.2747	0.0000
7	ENSG00000275549	STPG3-AS1	STPG3 antisense RNA 1	8.2159	0.0000
8	ENSG00000265401		novel transcript	8.0919	0.0000
9	ENSG00000240409	MTATP8P1	MT-ATP8 pseudogene 1	8.0648	0.0008
10	ENSG00000248527	MTATP6P1	MT-ATP6 pseudogene 1	8.0376	0.0008

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000258851		novel transcript, antisense to BAG5	-1.0000	0.0008
63127	ENSG00000258847		novel transcript	-1.0000	0.0284
63126	ENSG00000258732		arginine-glutamic acid dipeptide (RE) repeats (RERE) pseudogene	-1.0000	0.0000
63125	ENSG00000258678	LINC02317	long intergenic non-protein coding RNA 2317	-1.0000	0.0000
63124	ENSG00000258666		novel transcript, antisense to WARS	-1.0000	0.0000
63123	ENSG00000258602	LINC01629	long intergenic non-protein coding RNA 1629	-1.0000	0.0000
63122	ENSG00000258597	SERPINA2	serpin family A member 2 (gene/pseudogene)	-1.0000	0.0284
63121	ENSG00000258451	EGILA	EGFR interacting lncRNA	-1.0000	0.0008
63120	ENSG00000258439		ribosomal protein S2 (RPS2) pseudogene	-1.0000	0.0000
63119	ENSG00000258346		novel transcript	-1.0000	0.0284

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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