SHOGoiN Cell Methylome: GSM2773778
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773778 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M405 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000255633 | MTRNR2L9 | MT-RNR2 like 9 | 9.5124 | 0.0000 |
| 2 | ENSG00000284135 | MIR3654 | microRNA 3654 | 8.9877 | 0.0000 |
| 3 | ENSG00000213269 | ribosomal protein S6 (RPS6) pseudogene | 8.7666 | 0.0000 | |
| 4 | ENSG00000215030 | RPL13P12 | ribosomal protein L13 pseudogene 12 | 8.3731 | 0.0000 |
| 5 | ENSG00000244313 | ribosomal protein S10 (RPS10) pseudogene | 8.2857 | 0.0000 | |
| 6 | ENSG00000231684 | EIF1P3 | eukaryotic translation initiation factor 1 pseudogene 3 | 8.2747 | 0.0000 |
| 7 | ENSG00000275549 | STPG3-AS1 | STPG3 antisense RNA 1 | 8.2159 | 0.0000 |
| 8 | ENSG00000265401 | novel transcript | 8.0919 | 0.0000 | |
| 9 | ENSG00000240409 | MTATP8P1 | MT-ATP8 pseudogene 1 | 8.0648 | 0.0008 |
| 10 | ENSG00000248527 | MTATP6P1 | MT-ATP6 pseudogene 1 | 8.0376 | 0.0008 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000267259 | ERVE-1 | endogenous retrovirus group E member 1 | -1.0000 | 0.0000 |
| 63340 | ENSG00000267223 | novel transcript, antisense to ZNF536 | -1.0000 | 0.0000 | |
| 63339 | ENSG00000267196 | novel transcript, sense intronic to MYO5B | -1.0000 | 0.0008 | |
| 63338 | ENSG00000267123 | SCAT1 | S-phase cancer associated transcript 1 | -1.0000 | 0.0284 |
| 63337 | ENSG00000267011 | novel transcript | -1.0000 | 0.0000 | |
| 63336 | ENSG00000267007 | novel transcript, antisense to REXO1 | -1.0000 | 0.0000 | |
| 63335 | ENSG00000266983 | novel transcript, antisense to RFX2 | -1.0000 | 0.0284 | |
| 63334 | ENSG00000266925 | novel transcript | -1.0000 | 0.0000 | |
| 63333 | ENSG00000266903 | novel transcript, antisense to CEACAM16, CEACAM19, PVR & IGSF23 | -1.0000 | 0.0008 | |
| 63332 | ENSG00000266850 | novel transcript, antisense to RBBP8 | -1.0000 | 0.0284 |
