Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773778

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773778


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M405Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 9.5124 0.0000
2 ENSG00000284135 MIR3654 microRNA 3654 8.9877 0.0000
3 ENSG00000213269 RPS6P26 ribosomal protein S6 pseudogene 26 8.7666 0.0000
4 ENSG00000215030 RPL13P12 ribosomal protein L13 pseudogene 12 8.3731 0.0000
5 ENSG00000244313 ribosomal protein S10 (RPS10) pseudogene 8.2857 0.0000
6 ENSG00000231684 EIF1P3 eukaryotic translation initiation factor 1 pseudogene 3 8.2747 0.0000
7 ENSG00000275549 STPG3-AS1 STPG3 antisense RNA 1 8.2159 0.0000
8 ENSG00000265401 novel transcript 8.0919 0.0000
9 ENSG00000240409 MTATP8P1 MT-ATP8 pseudogene 1 8.0648 0.0008
10 ENSG00000248527 MTATP6P1 MT-ATP6 pseudogene 1 8.0376 0.0008

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000258851 novel transcript, antisense to BAG5 -1.0000 0.0008
63127 ENSG00000258847 novel transcript -1.0000 0.0284
63126 ENSG00000258732 arginine-glutamic acid dipeptide (RE) repeats (RERE) pseudogene -1.0000 0.0000
63125 ENSG00000258678 LINC02317 long intergenic non-protein coding RNA 2317 -1.0000 0.0000
63124 ENSG00000258666 novel transcript, antisense to WARS -1.0000 0.0000
63123 ENSG00000258602 LINC01629 long intergenic non-protein coding RNA 1629 -1.0000 0.0000
63122 ENSG00000258597 SERPINA2 serpin family A member 2 (gene/pseudogene) -1.0000 0.0284
63121 ENSG00000258451 EGILA EGFR interacting lncRNA -1.0000 0.0008
63120 ENSG00000258439 ribosomal protein S2 (RPS2) pseudogene -1.0000 0.0000
63119 ENSG00000258346 novel transcript -1.0000 0.0284

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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