Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773778
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773778
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M405
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000255633
MTRNR2L9
MT-RNR2 like 9
9.5124
0.0000
2
ENSG00000284135
MIR3654
microRNA 3654
8.9877
0.0000
3
ENSG00000213269
RPS6P26
ribosomal protein S6 pseudogene 26
8.7666
0.0000
4
ENSG00000215030
RPL13P12
ribosomal protein L13 pseudogene 12
8.3731
0.0000
5
ENSG00000244313
ribosomal protein S10 (RPS10) pseudogene
8.2857
0.0000
6
ENSG00000231684
EIF1P3
eukaryotic translation initiation factor 1 pseudogene 3
8.2747
0.0000
7
ENSG00000275549
STPG3-AS1
STPG3 antisense RNA 1
8.2159
0.0000
8
ENSG00000265401
novel transcript
8.0919
0.0000
9
ENSG00000240409
MTATP8P1
MT-ATP8 pseudogene 1
8.0648
0.0008
10
ENSG00000248527
MTATP6P1
MT-ATP6 pseudogene 1
8.0376
0.0008
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000258851
novel transcript, antisense to BAG5
-1.0000
0.0008
63127
ENSG00000258847
novel transcript
-1.0000
0.0284
63126
ENSG00000258732
arginine-glutamic acid dipeptide (RE) repeats (RERE) pseudogene
-1.0000
0.0000
63125
ENSG00000258678
LINC02317
long intergenic non-protein coding RNA 2317
-1.0000
0.0000
63124
ENSG00000258666
novel transcript, antisense to WARS
-1.0000
0.0000
63123
ENSG00000258602
LINC01629
long intergenic non-protein coding RNA 1629
-1.0000
0.0000
63122
ENSG00000258597
SERPINA2
serpin family A member 2 (gene/pseudogene)
-1.0000
0.0284
63121
ENSG00000258451
EGILA
EGFR interacting lncRNA
-1.0000
0.0008
63120
ENSG00000258439
ribosomal protein S2 (RPS2) pseudogene
-1.0000
0.0000
63119
ENSG00000258346
novel transcript
-1.0000
0.0284
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...