SHOGoiN Cell Methylome: GSM2773779

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773779


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M406Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231684 EIF1P3 eukaryotic translation initiation factor 1 pseudogene 3 9.2226 0.0000
2 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 9.1355 0.0000
3 ENSG00000265095 FTLP12 ferritin light chain pseudogene 12 8.3054 0.0000
4 ENSG00000215030 RPL13P12 ribosomal protein L13 pseudogene 12 8.1446 0.0000
5 ENSG00000284135 MIR3654 microRNA 3654 8.0865 0.0000
6 ENSG00000198744 MTCO3P12 MT-CO3 pseudogene 12 7.7834 0.0000
7 ENSG00000163710 PCOLCE2 procollagen C-endopeptidase enhancer 2 7.7770 0.0000
8 ENSG00000240950 ribosomal protein L8 (RPL8) pseudogene 7.7770 0.0000
9 ENSG00000244313 ribosomal protein S10 (RPS10) pseudogene 7.7542 0.0000
10 ENSG00000240409 MTATP8P1 MT-ATP8 pseudogene 1 7.7527 0.1138

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000260316 novel transcript, intronic to LMF1 -1.0000 0.0294
63340 ENSG00000260314 MRC1 mannose receptor C-type 1 -1.0000 0.0294
63339 ENSG00000260262 novel transcript -1.0000 0.0000
63338 ENSG00000260260 SNHG19 small nucleolar RNA host gene 19 -1.0000 0.0000
63337 ENSG00000260251 zinc finger protein 161 homolog (mouse) (ZFP161) pseudogene -1.0000 0.0000
63336 ENSG00000260188 novel transcript, antisense to SLC22A16 -1.0000 0.0000
63335 ENSG00000260165 microtubule associated serine/threonine kinase 2 (MAST2) pseudogene -1.0000 0.0000
63334 ENSG00000260135 MMP2-AS1 MMP2 antisense RNA 1 -1.0000 0.0009
63333 ENSG00000260082 chromosome 20 open reading frame 27 (C20orf27p) pseudogene -1.0000 0.0294
63332 ENSG00000260073 novel transcript -1.0000 0.0294

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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