SHOGoiN Cell Methylome: GSM2986379

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2986379


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7010000000000000000000-772Sequence Read ArchiveSRP074598SRP074598_M619Single-cell DNA methylome sequencing of human preimplantation embryosMethylome8-cell embryoHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000275072 SNORD50B small nucleolar RNA, C/D box 50B 3.8465 0.0000
2 ENSG00000264940 SNORD3C small nucleolar RNA, C/D box 3C 3.1377 0.0000
3 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.7068 0.0000
4 ENSG00000251340 MTCYBP35 MT-CYB pseudogene 35 2.6246 0.0000
5 ENSG00000182722 SEPHS1P1 selenophosphate synthetase 1 pseudogene 1 2.3219 0.0089
6 ENSG00000211673 IGLV3-1 immunoglobulin lambda variable 3-1 2.1114 0.0000
7 ENSG00000254709 IGLL5 immunoglobulin lambda like polypeptide 5 2.1114 0.0000
8 ENSG00000264824 MIR5571 microRNA 5571 2.1114 0.0000
9 ENSG00000011454 RABGAP1 RAB GTPase activating protein 1 2.0000 0.0290
10 ENSG00000100554 ATP6V1D ATPase H+ transporting V1 subunit D 2.0000 0.0008

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000235426 novel transcript -1.5850 0.1168
63340 ENSG00000235350 SSX7 pseudogene (psiSSX7) -1.5850 0.1869
63339 ENSG00000235244 DANT2 DXZ4 associated non-coding transcript 2, distal -1.5850 0.0000
63338 ENSG00000235242 novel transcript -1.5850 1.0000
63337 ENSG00000234857 HNRNPUL2-BSCL2 HNRNPUL2-BSCL2 readthrough (NMD candidate) -1.5850 1.0000
63336 ENSG00000234791 novel transcript -1.5850 0.1869
63335 ENSG00000234787 LINC00458 long intergenic non-protein coding RNA 458 -1.5850 0.1869
63334 ENSG00000234703 novel transcript -1.5850 1.0000
63333 ENSG00000234435 LINC01432 long intergenic non-protein coding RNA 1432 -1.5850 1.0000
63332 ENSG00000233682 novel transcript, antisense to FNDC1 -1.5850 0.1168

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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