Publication List -2005-

• Kato T, Fujibuchi W, Asai K.

  Kernel construction from distance constraints.

  CBRC Technical Report AIST02-J00001-7, 2005.

• Ono Y, Fujibuchi W, Suwa M.

  Automatic gene collection system for genome-scale overview of G-protein coupled receptors in Eukaryotes.

  Gene 364:63-73, 2005.

• Barrett T, Suzek T.O, Troup D.B, Wilhite S.E, Ngau W.C, Ledoux P, Rudnev D, Lash A.E, Fujibuchi W, Edgar R.

  NCBI GEO: mining millions of expression profiles—database and tools.

  Nucleic Acids Res. 33(Database issue):D562-566, 2005.

• Horton P, Fujibuchi W.

  An Upper Bound on the Hardness of Exact Matrix Based Motif Discovery.

  Combinatorial Pattern Matching,16th Annual Symposium 3537:219-228, 2005.

• Fujibuchi W, Anderson J.S, Landsman D.

  PROSPECT improves cis-acting regulatory element prediction by integrating expression profile data with consensus pattern searches.

  Nucleic Acids Res. 29(19):3988-3996, 2001.

• Fujibuchi W, Ogata H, Matsuda H, Kanehisa M.

  Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping.

  Nucleic Acids Res. 28(20):4029-4036, 2000.

• Ogata H, Fujibuchi W, Goto S, Kanehisa M.

  A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters.

  Nucleic Acids Res. 28(20):4021-4028, 2000.

• Ogata H, Goto S, Sato K, Fujibuchi W, Bono H, Kanehisa M.

  KEGG: Kyoto Encyclopedia of Genes and Genomes.

  Nucleic Acids Res. 27(1):29-34, 1999.

• Ogata H, Goto S, Fujibuchi W, Kanehisa M.

  Computation with the KEGG pathway database.

  BioSystems 47(1-2):119-128, 1998.

• Bono H, Goto S, Fujibuchi W, Ogata H, Kanehisa M.

  Systematic prediction of orthologous units of genes in the complete genomes.

  Genome informatics. Workshop on Genome Informatics 9:32-40, 1998.

• Fujibuchi W, Sato K, Ogata H, Goto S, Kanehisa M.

  KEGG and DBGET/LinkDB: Integration of biological relationships in divergent molecular biology data.

  AAAI Technical Report WS-98-04 35-40, 1998.

• Fujibuchi W, Goto S, Migimatsu H, Uchiyama I, Ogiwara A, Akiyama Y, Kanehisa M.

  DBGET/LinkDB: an integrated database retrieval system.

  Pacific Symposium on Biocomputing 1998 683-694, 1998.

• Fujibuchi W, Kanehisa M.

  Prediction of gene expression specificity by promoter sequence patterns.

  DNA Res. 4(2):81-90, 1997.

• Goto S, Bono H, Ogata H, Fujibuchi W, Nishioka T, Sato K, Kanehisa M.

  Organizing and computing metabolic pathway data in terms of binary relations.

  Pacific Symposium on Biocomputing '97 175-186, 1997.

• Ogata H, Fujibuchi W, Kanehisa M.

  The size differences among mammalian introns are due to the accumulation of small deletions.

  FEBS Lett. 390(1):99-103, 1996.

• Ogata H, Bono H, Fujibuchi W, Goto S, Kanehisa M.

  Analysis of binary relations and hierarchies of enzymes in the metabolic pathways.

  Proc. 7th Workshop on Genome Informatics 128-136, 1996.

• Fujibuchi W, Kanehisa M.

  A method to extract functional motifs for transcriptional regulation in eukaryotic sequences.

  Bull. Inst. Chem. Res., Kyoto Univ. 71(3):317-326, 1993.