SHOGoiN Cell Transcriptome: Project ID SRP014428
| No. | Expression Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||||||||||||||||||||||||||||||||||
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| Project Title | Project Description | Project Submission Date | Organization Name | Stable Contact Information | Reference Submission Status | Reference Authors | Reference Title | Reference Pubmed Id | Assay Type | Assay Factor | Sample Id | SHOGoiN Cell Id | Source Cell Type | Source Organism | Race Or Strain | Age Or Stage | Source Tissue Or Organ | Source Cell Karyotype | Cell Lineage | Organism Genetic Information | Health Status | Source Provider | Assay Technology | Assay Detection Instrumentation | Assay Detection Instrument Vendor | Assessed Material | Source Cell Format | Source Cell Preparation Method | Source Cell Identidication Method | Source Cell Treatment | Data Id | Data Type | Data Processing Method | Data Processing Software And Version | Data Normalization Method | Data Normalization Software Name And Version | Data Analytical Software And Version | Reference Sequence Source | Genome Annotation Ref | ||||||
| 1 |  GSM967506 | 8010000000000000000000-004 | Sequence Read Archive | SRP014428 | SRP014428_T9 | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495 | 22-Jul-12 | Karolinska Institutet | Daniel Ramsk_ld, daniel.ramskold@licr.ki.se | Published | Ramsk_ld D, Luo S, Wang YC, Li R et al. | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. | 22820318 | Transcriptome | 8010000000000000000000-004 | GSM967506 | 8010000000000000000000-004 | Leucocyte | Human | Blood | RNA-seq | MiSeq | Illumina | polyA RNA | Single cell, cultured | SRR522079 | Sequence | RPKM | rpkmforgenes.py | hg19 | ||||||||||||||
| 2 |  GSM967507 | 8010000000000000000000-004 | Sequence Read Archive | SRP014428 | SRP014428_T10 | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495 | 22-Jul-12 | Karolinska Institutet | Daniel Ramsk_ld, daniel.ramskold@licr.ki.se | Published | Ramsk_ld D, Luo S, Wang YC, Li R et al. | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. | 22820318 | Transcriptome | 8010000000000000000000-004 | GSM967507 | 8010000000000000000000-004 | Leucocyte | Human | Blood | RNA-seq | MiSeq | Illumina | polyA RNA | Single cell, cultured | SRR522080 | Sequence | RPKM | rpkmforgenes.py | hg19 | ||||||||||||||
| 3 |  GSM967508 | 7020001000000000000000-715 | Sequence Read Archive | SRP014428 | SRP014428_T1 | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495 | 22-Jul-12 | Karolinska Institutet | Daniel Ramsk_ld, daniel.ramskold@licr.ki.se | Published | Ramsk_ld D, Luo S, Wang YC, Li R et al. | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. | 22820318 | Transcriptome | 7020001000000000000000-715 | GSM967508 | 7020001000000000000000-715 | Embryonic stem cell (Inner cell mass) | Human | Early embryonic tissue | RNA-seq | Genome Analyzer IIx | Illumina | polyA RNA | Single cell, cultured | SRR522081 | Sequence | RPKM | rpkmforgenes.py | hg19 | ||||||||||||||
| 4 |  GSM967509 | 7020001000000000000000-715 | Sequence Read Archive | SRP014428 | SRP014428_T2 | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495 | 22-Jul-12 | Karolinska Institutet | Daniel Ramsk_ld, daniel.ramskold@licr.ki.se | Published | Ramsk_ld D, Luo S, Wang YC, Li R et al. | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. | 22820318 | Transcriptome | 7020001000000000000000-715 | GSM967509 | 7020001000000000000000-715 | Embryonic stem cell (Inner cell mass) | Human | Early embryonic tissue | RNA-seq | Genome Analyzer IIx | Illumina | polyA RNA | Single cell, cultured | SRR522082 | Sequence | RPKM | rpkmforgenes.py | hg19 | ||||||||||||||
| 5 |  GSM967510 | 7020001000000000000000-715 | Sequence Read Archive | SRP014428 | SRP014428_T3 | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495 | 22-Jul-12 | Karolinska Institutet | Daniel Ramsk_ld, daniel.ramskold@licr.ki.se | Published | Ramsk_ld D, Luo S, Wang YC, Li R et al. | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. | 22820318 | Transcriptome | 7020001000000000000000-715 | GSM967510 | 7020001000000000000000-715 | Embryonic stem cell (Inner cell mass) | Human | Early embryonic tissue | RNA-seq | Genome Analyzer IIx | Illumina | polyA RNA | Single cell, cultured | SRR522083 | Sequence | RPKM | rpkmforgenes.py | hg19 | ||||||||||||||
| 6 |  GSM967511 | 7020001000000000000000-715 | Sequence Read Archive | SRP014428 | SRP014428_T4 | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495 | 22-Jul-12 | Karolinska Institutet | Daniel Ramsk_ld, daniel.ramskold@licr.ki.se | Published | Ramsk_ld D, Luo S, Wang YC, Li R et al. | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. | 22820318 | Transcriptome | 7020001000000000000000-715 | GSM967511 | 7020001000000000000000-715 | Embryonic stem cell (Inner cell mass) | Human | Early embryonic tissue | RNA-seq | Genome Analyzer IIx | Illumina | polyA RNA | Single cell, cultured | SRR522084 | Sequence | RPKM | rpkmforgenes.py | hg19 | ||||||||||||||
| 7 |  GSM967512 | 7020001000000000000000-715 | Sequence Read Archive | SRP014428 | SRP014428_T5 | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495 | 22-Jul-12 | Karolinska Institutet | Daniel Ramsk_ld, daniel.ramskold@licr.ki.se | Published | Ramsk_ld D, Luo S, Wang YC, Li R et al. | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. | 22820318 | Transcriptome | 7020001000000000000000-715 | GSM967512 | 7020001000000000000000-715 | Embryonic stem cell (Inner cell mass) | Human | Early embryonic tissue | RNA-seq | Genome Analyzer IIx | Illumina | polyA RNA | Single cell, cultured | SRR522085 | Sequence | RPKM | rpkmforgenes.py | hg19 | ||||||||||||||
| 8 |  GSM967513 | 7020001000000000000000-715 | Sequence Read Archive | SRP014428 | SRP014428_T6 | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495 | 22-Jul-12 | Karolinska Institutet | Daniel Ramsk_ld, daniel.ramskold@licr.ki.se | Published | Ramsk_ld D, Luo S, Wang YC, Li R et al. | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. | 22820318 | Transcriptome | 7020001000000000000000-715 | GSM967513 | 7020001000000000000000-715 | Embryonic stem cell (Inner cell mass) | Human | Early embryonic tissue | RNA-seq | Genome Analyzer IIx | Illumina | polyA RNA | Single cell, cultured | SRR522086 | Sequence | RPKM | rpkmforgenes.py | hg19 | ||||||||||||||
| 9 |  GSM967514 | 7020001000000000000000-715 | Sequence Read Archive | SRP014428 | SRP014428_T7 | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495 | 22-Jul-12 | Karolinska Institutet | Daniel Ramsk_ld, daniel.ramskold@licr.ki.se | Published | Ramsk_ld D, Luo S, Wang YC, Li R et al. | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. | 22820318 | Transcriptome | 7020001000000000000000-715 | GSM967514 | 7020001000000000000000-715 | Embryonic stem cell (Inner cell mass) | Human | Early embryonic tissue | RNA-seq | Genome Analyzer IIx | Illumina | polyA RNA | Single cell, cultured | SRR522087 | Sequence | RPKM | rpkmforgenes.py | hg19 | ||||||||||||||
| 10 |  GSM967515 | 7020001000000000000000-715 | Sequence Read Archive | SRP014428 | SRP014428_T8 | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495 | 22-Jul-12 | Karolinska Institutet | Daniel Ramsk_ld, daniel.ramskold@licr.ki.se | Published | Ramsk_ld D, Luo S, Wang YC, Li R et al. | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. | 22820318 | Transcriptome | 7020001000000000000000-715 | GSM967515 | 7020001000000000000000-715 | Embryonic stem cell (Inner cell mass) | Human | Early embryonic tissue | RNA-seq | Genome Analyzer IIx | Illumina | polyA RNA | Single cell, cultured | SRR522088 | Sequence | RPKM | rpkmforgenes.py | hg19 | ||||||||||||||
| 11 |  GSM967487 | 5030206000000000000000-761 | Sequence Read Archive | SRP014428 | SRP014428_T11 | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495 | 22-Jul-12 | Karolinska Institutet | Daniel Ramsk_ld, daniel.ramskold@licr.ki.se | Published | Ramsk_ld D, Luo S, Wang YC, Li R et al. | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. | 22820318 | Transcriptome | 5030206000000000000000-761 | GSM967487 | 5030206000000000000000-761 | Secondary oocyte (Ovarian follicle) | Mouse | CAST/Ei | Genitalia | RNA-seq | HiSeq 2000 | Illumina | polyA RNA | Single cell, cultured | SRR522060 | Sequence | RPKM | rpkmforgenes.py | mm9 | |||||||||||||
| 12 |  GSM967488 | 5030206000000000000000-761 | Sequence Read Archive | SRP014428 | SRP014428_T12 | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495 | 22-Jul-12 | Karolinska Institutet | Daniel Ramsk_ld, daniel.ramskold@licr.ki.se | Published | Ramsk_ld D, Luo S, Wang YC, Li R et al. | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. | 22820318 | Transcriptome | 5030206000000000000000-761 | GSM967488 | 5030206000000000000000-761 | Secondary oocyte (Ovarian follicle) | Mouse | CAST/Ei | Genitalia | RNA-seq | HiSeq 2000 | Illumina | polyA RNA | Single cell, cultured | SRR522061 | Sequence | RPKM | rpkmforgenes.py | mm9 | |||||||||||||
| 13 |  GSM967489 | 5030206000000000000000-761 | Sequence Read Archive | SRP014428 | SRP014428_T13 | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38495 | 22-Jul-12 | Karolinska Institutet | Daniel Ramsk_ld, daniel.ramskold@licr.ki.se | Published | Ramsk_ld D, Luo S, Wang YC, Li R et al. | Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. | 22820318 | Transcriptome | 5030206000000000000000-761 | GSM967489 | 5030206000000000000000-761 | Secondary oocyte (Ovarian follicle) | Mouse | CAST/Ei | Genitalia | RNA-seq | HiSeq 2000 | Illumina | polyA RNA | Single cell, cultured | SRR522062 | Sequence | RPKM | rpkmforgenes.py | mm9 | |||||||||||||