SHOGoiN Cell Transcriptome: Project ID SRP067892
| No. | Expression Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||||||||||||||||||||||||||||||||||
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| Project Title | Project Description | Project Submission Date | Organization Name | Stable Contact Information | Reference Submission Status | Reference Authors | Reference Title | Reference Pubmed Id | Assay Type | Assay Factor | Sample Id | SHOGoiN Cell Id | Source Cell Type | Source Organism | Race Or Strain | Age Or Stage | Source Tissue Or Organ | Source Cell Karyotype | Cell Lineage | Organism Genetic Information | Health Status | Source Provider | Assay Technology | Assay Detection Instrumentation | Assay Detection Instrument Vendor | Assessed Material | Source Cell Format | Source Cell Preparation Method | Source Cell Identidication Method | Source Cell Treatment | Data Id | Data Type | Data Processing Method | Data Processing Software And Version | Data Normalization Method | Data Normalization Software Name And Version | Data Analytical Software And Version | Reference Sequence Source | Genome Annotation Ref | ||||||
| 1 |  GSM1987570 | 3120102010200000000000-082 | Sequence Read Archive | SRP067892 | SRP067892_T1 | Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineage | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408 | 29-Dec-15 | Hubrecht Institute | Kay Wiebrands, k.wiebrands@hubrecht.eu | Published | Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al. | De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data. | 27345837 | Transcriptome | 3120102010200000000000-082 | GSM1987570 | 3120102010200000000000-082 | Lgr5-positive intestinal cell (CBC cell) | Mouse | Lgr5-CreERT2 C57BL6/J | 3 mo | Small intestine | Tamoxifen injection (0.4mg), 5 day traced | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell | SRR3063721 | Sequence | mm10 | |||||||||||||
| 2 |  GSM1987571 | 3120102010200000000000-082 | Sequence Read Archive | SRP067892 | SRP067892_T2 | Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineage | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408 | 29-Dec-15 | Hubrecht Institute | Kay Wiebrands, k.wiebrands@hubrecht.eu | Published | Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al. | De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data. | 27345837 | Transcriptome | 3120102010200000000000-082 | GSM1987571 | 3120102010200000000000-082 | Lgr5-positive intestinal cell (CBC cell) | Mouse | Lgr5-CreERT2 C57BL6/J | 3 mo | Small intestine | Tamoxifen injection (0.4mg), 5 day traced | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell | SRR3063722 | Sequence | mm10 | |||||||||||||
| 3 |  GSM1987573 | 3120102010200000000000-082 | Sequence Read Archive | SRP067892 | SRP067892_T3 | Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineage | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408 | 29-Dec-15 | Hubrecht Institute | Kay Wiebrands, k.wiebrands@hubrecht.eu | Published | Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al. | De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data. | 27345837 | Transcriptome | 3120102010200000000000-082 | GSM1987573 | 3120102010200000000000-082 | Lgr5-positive intestinal cell (CBC cell) | Mouse | Lgr5-CreERT2 C57BL6/J | 3 mo | Small intestine | Tamoxifen injection (0.4mg), 5 day traced | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell | SRR3063723 | Sequence | mm10 | |||||||||||||
| 4 |  GSM1987574 | 3120102010200000000000-082 | Sequence Read Archive | SRP067892 | SRP067892_T4 | Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineage | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408 | 29-Dec-15 | Hubrecht Institute | Kay Wiebrands, k.wiebrands@hubrecht.eu | Published | Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al. | De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data. | 27345837 | Transcriptome | 3120102010200000000000-082 | GSM1987574 | 3120102010200000000000-082 | Lgr5-positive intestinal cell (CBC cell) | Mouse | Lgr5-CreERT2 C57BL6/J | 3 mo | Small intestine | Tamoxifen injection (0.4mg), 5 day traced | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell | SRR3063724 | Sequence | mm10 | |||||||||||||
| 5 |  GSM1987575 | 3120102010200000000000-082 | Sequence Read Archive | SRP067892 | SRP067892_T5 | Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineage | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408 | 29-Dec-15 | Hubrecht Institute | Kay Wiebrands, k.wiebrands@hubrecht.eu | Published | Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al. | De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data. | 27345837 | Transcriptome | 3120102010200000000000-082 | GSM1987575 | 3120102010200000000000-082 | Lgr5-positive intestinal cell (CBC cell) | Mouse | Lgr5-CreERT2 C57BL6/J | 3 mo | Small intestine | Tamoxifen injection (0.4mg), 5 day traced | RNA-Seq | HiSeq 2500 | Illumina | Total RNA | Single cell | SRR3063725 | Sequence | mm10 | |||||||||||||
| 6 |  GSM1987576 | 3120102010200000000000-082 | Sequence Read Archive | SRP067892 | SRP067892_T6 | Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineage | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408 | 29-Dec-15 | Hubrecht Institute | Kay Wiebrands, k.wiebrands@hubrecht.eu | Published | Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al. | De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data. | 27345837 | Transcriptome | 3120102010200000000000-082 | GSM1987576 | 3120102010200000000000-082 | Lgr5-positive intestinal cell (CBC cell), CD24+ fraction | Mouse | Lgr5-CreERT2 C57BL6/J | 3 mo | Small intestine | Tamoxifen injection (0.4mg), 3 week traced | RNA-Seq | NextSeq 500 | Illumina | Total RNA | Single cell | SRR3063726 | Sequence | mm10 | |||||||||||||
| 7 |  GSM1987577 | 3120102010200000000000-082 | Sequence Read Archive | SRP067892 | SRP067892_T7 | Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineage | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408 | 29-Dec-15 | Hubrecht Institute | Kay Wiebrands, k.wiebrands@hubrecht.eu | Published | Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al. | De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data. | 27345837 | Transcriptome | 3120102010200000000000-082 | GSM1987577 | 3120102010200000000000-082 | 3 week CD24+ cell | Mouse | Lgr5-CreERT2 C57BL6/J | 3 mo | Small intestine | Tamoxifen injection (0.4mg), non-traced | RNA-Seq | NextSeq 500 | Illumina | Total RNA | Single cell | SRR3063727 | Sequence | mm10 | |||||||||||||
| 8 |  GSM1987578 | 3120102010200000000000-082 | Sequence Read Archive | SRP067892 | SRP067892_T8 | Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineage | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408 | 29-Dec-15 | Hubrecht Institute | Kay Wiebrands, k.wiebrands@hubrecht.eu | Published | Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al. | De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data. | 27345837 | Transcriptome | 3120102010200000000000-082 | GSM1987578 | 3120102010200000000000-082 | Lgr5-positive intestinal cell (CBC cell), CD24+ fraction | Mouse | Lgr5-CreERT2 C57BL6/J | 3 mo | Small intestine | Tamoxifen injection (0.4mg), 8 week traced | RNA-Seq | NextSeq 500 | Illumina | Total RNA | Single cell | SRR3063728 | Sequence | mm10 | |||||||||||||
| 9 |  GSM1987579 | 3120102010200000000000-082 | Sequence Read Archive | SRP067892 | SRP067892_T9 | Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineage | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408 | 29-Dec-15 | Hubrecht Institute | Kay Wiebrands, k.wiebrands@hubrecht.eu | Published | Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al. | De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data. | 27345837 | Transcriptome | 3120102010200000000000-082 | GSM1987579 | 3120102010200000000000-082 | Lgr5-positive intestinal cell (CBC cell) | Mouse | Lgr5-CreERT2 C57BL6/J | 3 mo | Small intestine | Tamoxifen injection (0.4mg), 8 week traced | RNA-Seq | NextSeq 500 | Illumina | Total RNA | Single cell | SRR3063729 | Sequence | mm10 | |||||||||||||
| 10 |  GSM1987581 | 3120102010200000000000-082 | Sequence Read Archive | SRP067892 | SRP067892_T10 | Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineage | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408 | 29-Dec-15 | Hubrecht Institute | Kay Wiebrands, k.wiebrands@hubrecht.eu | Published | Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al. | De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data. | 27345837 | Transcriptome | 3120102010200000000000-082 | GSM1987581 | 3120102010200000000000-082 | Lgr5-positive intestinal cell (CBC cell), CD24+ fraction | Mouse | Lgr5-CreERT2 C57BL6/J | 3 mo | Small intestine | Tamoxifen injection (0.4mg), 8 week traced | RNA-Seq | NextSeq 500 | Illumina | Total RNA | Single cell | SRR3063730 | Sequence | mm10 | |||||||||||||
| 11 |  GSM1987582 | 3120102010200000000000-082 | Sequence Read Archive | SRP067892 | SRP067892_T11 | Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineage | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408 | 29-Dec-15 | Hubrecht Institute | Kay Wiebrands, k.wiebrands@hubrecht.eu | Published | Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al. | De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data. | 27345837 | Transcriptome | 3120102010200000000000-082 | GSM1987582 | 3120102010200000000000-082 | Lgr5-positive intestinal cell (CBC cell), CD24+ fraction | Mouse | Lgr5-CreERT2 C57BL6/J | 3 mo | Small intestine | Tamoxifen injection (0.4mg), 8 week traced | RNA-Seq | NextSeq 500 | Illumina | Total RNA | Single cell | SRR3063731 | Sequence | mm10 | |||||||||||||
| 12 |  GSM1987583 | 3120102010200000000000-082 | Sequence Read Archive | SRP067892 | SRP067892_T12 | Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineage | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408 | 29-Dec-15 | Hubrecht Institute | Kay Wiebrands, k.wiebrands@hubrecht.eu | Published | Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al. | De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data. | 27345837 | Transcriptome | 3120102010200000000000-082 | GSM1987583 | 3120102010200000000000-082 | 8 week CD24+ cell | Mouse | Lgr5-CreERT2 C57BL6/J | 3 mo | Small intestine | Tamoxifen injection (0.4mg), non-traced | RNA-Seq | NextSeq 500 | Illumina | Total RNA | Single cell | SRR3063732 | Sequence | mm10 | |||||||||||||
| 13 |  GSM1987584 | 3120102010200000000000-082 | Sequence Read Archive | SRP067892 | SRP067892_T13 | Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineage | http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76408 | 29-Dec-15 | Hubrecht Institute | Kay Wiebrands, k.wiebrands@hubrecht.eu | Published | Gr_n D, Muraro MJ, Boisset JC, Wiebrands K et al. | De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data. | 27345837 | Transcriptome | 3120102010200000000000-082 | GSM1987584 | 3120102010200000000000-082 | 8 week CD24+ cell | Mouse | Lgr5-CreERT2 C57BL6/J | 3 mo | Small intestine | Tamoxifen injection (0.4mg), non-traced | RNA-Seq | NextSeq 500 | Illumina | Total RNA | Single cell | SRR3063733 | Sequence | mm10 | |||||||||||||