SHOGoiN Cell Transcriptome: Project ID SRP125954
| No. | Expression Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||||||||||||||||||||||||||||||||||
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| Project Title | Project Description | Project Submission Date | Organization Name | Stable Contact Information | Reference Submission Status | Reference Authors | Reference Title | Reference Pubmed Id | Assay Type | Assay Factor | Sample Id | SHOGoiN Cell Id | Source Cell Type | Source Organism | Race Or Strain | Age Or Stage | Source Tissue Or Organ | Source Cell Karyotype | Cell Lineage | Organism Genetic Information | Health Status | Source Provider | Assay Technology | Assay Detection Instrumentation | Assay Detection Instrument Vendor | Assessed Material | Source Cell Format | Source Cell Preparation Method | Source Cell Identidication Method | Source Cell Treatment | Data Id | Data Type | Data Processing Method | Data Processing Software And Version | Data Normalization Method | Data Normalization Software Name And Version | Data Analytical Software And Version | Reference Sequence Source | Genome Annotation Ref | ||||||
| 1 |  GSM2871123-1 | 7020001000000000000000-715 | Sequence Read Archive | SRP125954 | SRP125954_T1 | Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencing | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107552 | 30-Nov-17 | Zhejiang University | Haide Chen, chenhyde628@gmail.com | Published | Han X, Chen H, Huang D | Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. | 29622030 | Transcriptome | 7020001000000000000000-715 | GSM2871123-1 | 7020001000000000000000-715 | Embryonic stem cell (Inner cell mass) | Human | Primed H9 | Early embryonic tissue | WiCell, Madison WI | RNA-Seq | HiSeq 2000 | Illumina | Total RNA | Single cell, cultured | Fluidigm C1 chip | SRR7093664 | Sequence | STAR v2.5.2a, featureCounts v1.5.1 | GRCh38 | ||||||||||||
| 2 |  GSM2871123-2 | 7020001000000000000000-715 | Sequence Read Archive | SRP125954 | SRP125954_T2 | Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencing | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107553 | 30-Nov-17 | Zhejiang University | Haide Chen, chenhyde628@gmail.com | Published | Han X, Chen H, Huang D | Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. | 29622030 | Transcriptome | 7020001000000000000000-715 | GSM2871123-2 | 7020001000000000000000-715 | Embryonic stem cell (Inner cell mass) | Human | Primed H9 | Early embryonic tissue | WiCell, Madison WI | RNA-Seq | HiSeq 2000 | Illumina | Total RNA | Single cell, cultured | Fluidigm C1 chip | SRR7093663 | Sequence | STAR v2.5.2a, featureCounts v1.5.1 | GRCh38 | ||||||||||||
| 3 |  GSM2871123-3 | 7020001000000000000000-715 | Sequence Read Archive | SRP125954 | SRP125954_T3 | Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencing | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107554 | 30-Nov-17 | Zhejiang University | Haide Chen, chenhyde628@gmail.com | Published | Han X, Chen H, Huang D | Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. | 29622030 | Transcriptome | 7020001000000000000000-715 | GSM2871123-3 | 7020001000000000000000-715 | Embryonic stem cell (Inner cell mass) | Human | Primed H9 | Early embryonic tissue | WiCell, Madison WI | RNA-Seq | HiSeq 2000 | Illumina | Total RNA | Single cell, cultured | Fluidigm C1 chip | SRR7093662 | Sequence | STAR v2.5.2a, featureCounts v1.5.1 | GRCh38 | ||||||||||||
| 4 |  GSM2871128 | 7020001000000000000000-715 | Sequence Read Archive | SRP125954 | SRP125954_T4 | Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencing | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107555 | 30-Nov-17 | Zhejiang University | Haide Chen, chenhyde628@gmail.com | Published | Han X, Chen H, Huang D | Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. | 29622030 | Transcriptome | 7020001000000000000000-715 | GSM2871128 | 7020001000000000000000-715 | Embryonic stem cell (Inner cell mass) | Human | Day 10 reset H9 | Early embryonic tissue | WiCell, Madison WI | RNA-Seq | HiSeq 2000 | Illumina | Total RNA | Single cell, cultured | Fluidigm C1 chip | SRR6335130 | Sequence | STAR v2.5.2a, featureCounts v1.5.1 | GRCh38 | ||||||||||||
| 5 |  GSM2871129 | 7020001000000000000000-715 | Sequence Read Archive | SRP125954 | SRP125954_T5 | Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencing | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107556 | 30-Nov-17 | Zhejiang University | Haide Chen, chenhyde628@gmail.com | Published | Han X, Chen H, Huang D | Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. | 29622030 | Transcriptome | 7020001000000000000000-715 | GSM2871129 | 7020001000000000000000-715 | Embryonic stem cell (Inner cell mass) | Human | Day 20 reset H9 rep1 | Early embryonic tissue | WiCell, Madison WI | RNA-Seq | HiSeq 2000 | Illumina | Total RNA | Single cell, cultured | Fluidigm C1 chip | SRR6335131 | Sequence | STAR v2.5.2a, featureCounts v1.5.1 | GRCh38 | ||||||||||||
| 6 |  GSM2871130 | 7020001000000000000000-715 | Sequence Read Archive | SRP125954 | SRP125954_T6 | Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencing | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107557 | 30-Nov-17 | Zhejiang University | Haide Chen, chenhyde628@gmail.com | Published | Han X, Chen H, Huang D | Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. | 29622030 | Transcriptome | 7020001000000000000000-715 | GSM2871130 | 7020001000000000000000-715 | Embryonic stem cell (Inner cell mass) | Human | Day 20 reset H9 rep1 | Early embryonic tissue | WiCell, Madison WI | RNA-Seq | HiSeq 2000 | Illumina | Total RNA | Single cell, cultured | Fluidigm C1 chip | SRR6335132 | Sequence | STAR v2.5.2a, featureCounts v1.5.1 | GRCh38 | ||||||||||||
| 7 |  GSM3015986 | 7020001000000000000000-715 | Sequence Read Archive | SRP125954 | SRP125954_T7 | Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencing | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107558 | 30-Nov-17 | Zhejiang University | Haide Chen, chenhyde628@gmail.com | Published | Han X, Chen H, Huang D | Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. | 29622030 | Transcriptome | 7020001000000000000000-715 | GSM3015986 | 7020001000000000000000-715 | Embryonic stem cell (Inner cell mass) | Human | Primed H1 | Early embryonic tissue | WiCell, Madison WI | RNA-Seq | HiSeq 2000 | Illumina | Total RNA | Single cell, cultured | Fluidigm C1 chip | SRR6745454 | Sequence | STAR v2.5.2a, featureCounts v1.5.1 | GRCh38 | ||||||||||||
| 8 |  GSM3015987 | 7020001000000000000000-715 | Sequence Read Archive | SRP125954 | SRP125954_T8 | Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencing | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107559 | 30-Nov-17 | Zhejiang University | Haide Chen, chenhyde628@gmail.com | Published | Han X, Chen H, Huang D | Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. | 29622030 | Transcriptome | 7020001000000000000000-715 | GSM3015987 | 7020001000000000000000-715 | Embryonic stem cell (Inner cell mass) | Human | Primed na_ve H1 | Early embryonic tissue | WiCell, Madison WI | RNA-Seq | HiSeq 2000 | Illumina | Total RNA | Single cell, cultured | Fluidigm C1 chip | SRR6745455 | Sequence | STAR v2.5.2a, featureCounts v1.5.1 | GRCh38 | ||||||||||||