Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: Project ID SRP125954
No.
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Project Description
Project Submission Date
Organization Name
Stable Contact Information
Reference Submission Status
Reference Authors
Reference Title
Reference Pubmed Id
Assay Type
Assay Factor
Sample Id
SHOGoiN Cell Id
Source Cell Type
Source Organism
Race Or Strain
Age Or Stage
Source Tissue Or Organ
Source Cell Karyotype
Cell Lineage
Organism Genetic Information
Health Status
Source Provider
Assay Technology
Assay Detection Instrumentation
Assay Detection Instrument Vendor
Assessed Material
Source Cell Format
Source Cell Preparation Method
Source Cell Identidication Method
Source Cell Treatment
Data Id
Data Type
Data Processing Method
Data Processing Software And Version
Data Normalization Method
Data Normalization Software Name And Version
Data Analytical Software And Version
Reference Sequence Source
Genome Annotation Ref
1
GSM2871123-1
7020001000000000000000-715
Sequence Read Archive
SRP125954
SRP125954_T1
Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencing
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107552
30-Nov-17
Zhejiang University
Haide Chen, chenhyde628@gmail.com
Published
Han X, Chen H, Huang D
Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing.
29622030
Transcriptome
7020001000000000000000-715
GSM2871123-1
7020001000000000000000-715
Embryonic stem cell (Inner cell mass)
Human
Primed H9
Early embryonic tissue
WiCell, Madison WI
RNA-Seq
HiSeq 2000
Illumina
Total RNA
Single cell, cultured
Fluidigm C1 chip
SRR7093664
Sequence
STAR v2.5.2a, featureCounts v1.5.1
GRCh38
2
GSM2871123-2
7020001000000000000000-715
Sequence Read Archive
SRP125954
SRP125954_T2
Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencing
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107553
30-Nov-17
Zhejiang University
Haide Chen, chenhyde628@gmail.com
Published
Han X, Chen H, Huang D
Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing.
29622030
Transcriptome
7020001000000000000000-715
GSM2871123-2
7020001000000000000000-715
Embryonic stem cell (Inner cell mass)
Human
Primed H9
Early embryonic tissue
WiCell, Madison WI
RNA-Seq
HiSeq 2000
Illumina
Total RNA
Single cell, cultured
Fluidigm C1 chip
SRR7093663
Sequence
STAR v2.5.2a, featureCounts v1.5.1
GRCh38
3
GSM2871123-3
7020001000000000000000-715
Sequence Read Archive
SRP125954
SRP125954_T3
Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencing
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107554
30-Nov-17
Zhejiang University
Haide Chen, chenhyde628@gmail.com
Published
Han X, Chen H, Huang D
Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing.
29622030
Transcriptome
7020001000000000000000-715
GSM2871123-3
7020001000000000000000-715
Embryonic stem cell (Inner cell mass)
Human
Primed H9
Early embryonic tissue
WiCell, Madison WI
RNA-Seq
HiSeq 2000
Illumina
Total RNA
Single cell, cultured
Fluidigm C1 chip
SRR7093662
Sequence
STAR v2.5.2a, featureCounts v1.5.1
GRCh38
4
GSM2871128
7020001000000000000000-715
Sequence Read Archive
SRP125954
SRP125954_T4
Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencing
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107555
30-Nov-17
Zhejiang University
Haide Chen, chenhyde628@gmail.com
Published
Han X, Chen H, Huang D
Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing.
29622030
Transcriptome
7020001000000000000000-715
GSM2871128
7020001000000000000000-715
Embryonic stem cell (Inner cell mass)
Human
Day 10 reset H9
Early embryonic tissue
WiCell, Madison WI
RNA-Seq
HiSeq 2000
Illumina
Total RNA
Single cell, cultured
Fluidigm C1 chip
SRR6335130
Sequence
STAR v2.5.2a, featureCounts v1.5.1
GRCh38
5
GSM2871129
7020001000000000000000-715
Sequence Read Archive
SRP125954
SRP125954_T5
Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencing
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107556
30-Nov-17
Zhejiang University
Haide Chen, chenhyde628@gmail.com
Published
Han X, Chen H, Huang D
Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing.
29622030
Transcriptome
7020001000000000000000-715
GSM2871129
7020001000000000000000-715
Embryonic stem cell (Inner cell mass)
Human
Day 20 reset H9 rep1
Early embryonic tissue
WiCell, Madison WI
RNA-Seq
HiSeq 2000
Illumina
Total RNA
Single cell, cultured
Fluidigm C1 chip
SRR6335131
Sequence
STAR v2.5.2a, featureCounts v1.5.1
GRCh38
6
GSM2871130
7020001000000000000000-715
Sequence Read Archive
SRP125954
SRP125954_T6
Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencing
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107557
30-Nov-17
Zhejiang University
Haide Chen, chenhyde628@gmail.com
Published
Han X, Chen H, Huang D
Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing.
29622030
Transcriptome
7020001000000000000000-715
GSM2871130
7020001000000000000000-715
Embryonic stem cell (Inner cell mass)
Human
Day 20 reset H9 rep1
Early embryonic tissue
WiCell, Madison WI
RNA-Seq
HiSeq 2000
Illumina
Total RNA
Single cell, cultured
Fluidigm C1 chip
SRR6335132
Sequence
STAR v2.5.2a, featureCounts v1.5.1
GRCh38
7
GSM3015986
7020001000000000000000-715
Sequence Read Archive
SRP125954
SRP125954_T7
Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencing
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107558
30-Nov-17
Zhejiang University
Haide Chen, chenhyde628@gmail.com
Published
Han X, Chen H, Huang D
Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing.
29622030
Transcriptome
7020001000000000000000-715
GSM3015986
7020001000000000000000-715
Embryonic stem cell (Inner cell mass)
Human
Primed H1
Early embryonic tissue
WiCell, Madison WI
RNA-Seq
HiSeq 2000
Illumina
Total RNA
Single cell, cultured
Fluidigm C1 chip
SRR6745454
Sequence
STAR v2.5.2a, featureCounts v1.5.1
GRCh38
8
GSM3015987
7020001000000000000000-715
Sequence Read Archive
SRP125954
SRP125954_T8
Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencing
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107559
30-Nov-17
Zhejiang University
Haide Chen, chenhyde628@gmail.com
Published
Han X, Chen H, Huang D
Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing.
29622030
Transcriptome
7020001000000000000000-715
GSM3015987
7020001000000000000000-715
Embryonic stem cell (Inner cell mass)
Human
Primed na_ve H1
Early embryonic tissue
WiCell, Madison WI
RNA-Seq
HiSeq 2000
Illumina
Total RNA
Single cell, cultured
Fluidigm C1 chip
SRR6745455
Sequence
STAR v2.5.2a, featureCounts v1.5.1
GRCh38