Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1080196
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1080196
Profile download
5030206000000000000000-761
Sequence Read Archive
SRP018525
SRP018525_T2
Genetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-Sequencing
Transcriptome
Secondary oocyte (Ovarian follicle)
Mouse
Genitalia
RNA-seq
HiSeq 2000
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSMUSG00000018238
Gdf9
growth differentiation factor 9
84.9026
2
ENSMUSG00000042279
H1f8
H1.8 linker histone
83.3085
3
ENSMUSG00000021395
Spin1
spindlin 1
55.2802
4
ENSMUSG00000032191
Bcl2l10
Bcl2-like 10
49.5447
5
ENSMUSG00000038925
E330034G19Rik
RIKEN cDNA E330034G19 gene
49.0417
6
ENSMUSG00000041359
Tcl1
T cell lymphoma breakpoint 1
46.5989
7
ENSMUSG00000074369
Obox2
oocyte specific homeobox 2
43.1832
8
ENSMUSG00000031538
Plat
plasminogen activator, tissue
37.2736
9
ENSMUSG00000064351
mt-Co1
mitochondrially encoded cytochrome c oxidase I
32.8597
10
ENSMUSG00000031353
Rbbp7
retinoblastoma binding protein 7, chromatin remodeling factor
32.4882
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
54189
ENSMUSG00000116942
Gm49744
predicted gene, 49744
-0.0962
54188
ENSMUSG00000116941
Gm46578
predicted gene, 46578
-0.0962
54187
ENSMUSG00000116940
Gm7450
predicted gene 7450
-0.0962
54186
ENSMUSG00000116939
Gm49619
predicted gene, 49619
-0.0962
54185
ENSMUSG00000116938
Gm49645
predicted gene, 49645
-0.0962
54184
ENSMUSG00000116937
Gm41480
predicted gene, 41480
-0.0962
54183
ENSMUSG00000116935
Gpr31a
G protein-coupled receptor 31, D17Leh66a region
-0.0962
54182
ENSMUSG00000116934
Gm3292
predicted gene 3292
-0.0962
54181
ENSMUSG00000116933
Atp5o
ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
-0.0962
54180
ENSMUSG00000116932
Fpr-rs5
formyl peptide receptor, related sequence 5
-0.0962
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
download
Now loading...