Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1080204
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1080204
Profile download
7010000000000000000000-771
Sequence Read Archive
SRP018525
SRP018525_T7
Genetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-Sequencing
Transcriptome
4-cell embryo cell (4-cell embryo)
Mouse
Early embryonic tissue
RNA-seq
HiSeq 2000
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSMUSG00000064351
mt-Co1
mitochondrially encoded cytochrome c oxidase I
136.5656
2
ENSMUSG00000064370
mt-Cytb
mitochondrially encoded cytochrome b
95.9341
3
ENSMUSG00000064339
mt-Rnr2
mitochondrially encoded 16S rRNA
79.9072
4
ENSMUSG00000064341
mt-Nd1
mitochondrially encoded NADH dehydrogenase 1
72.1512
5
ENSMUSG00000064345
mt-Nd2
mitochondrially encoded NADH dehydrogenase 2
69.2188
6
ENSMUSG00000064363
mt-Nd4
mitochondrially encoded NADH dehydrogenase 4
59.4107
7
ENSMUSG00000064367
mt-Nd5
mitochondrially encoded NADH dehydrogenase 5
42.6696
8
ENSMUSG00000057113
Npm1
nucleophosmin 1
18.6614
9
ENSMUSG00000021477
Ctsl
cathepsin L
16.3713
10
ENSMUSG00000064337
mt-Rnr1
mitochondrially encoded 12S rRNA
13.8078
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
54189
ENSMUSG00000116953
9030025P20Rik
RIKEN cDNA 9030025P20 gene
-0.0591
54188
ENSMUSG00000116952
Gm6914
predicted gene 6914
-0.0591
54187
ENSMUSG00000116951
Gm49756
predicted gene, 49756
-0.0591
54186
ENSMUSG00000116950
Gm18564
predicted gene, 18564
-0.0591
54185
ENSMUSG00000116949
Gm7177
predicted gene 7177
-0.0591
54184
ENSMUSG00000116947
2410003I16Rik
RIKEN cDNA 2410003I16 gene
-0.0591
54183
ENSMUSG00000116946
Gm41442
predicted gene, 41442
-0.0591
54182
ENSMUSG00000116945
Gm49663
predicted gene, 49663
-0.0591
54181
ENSMUSG00000116944
Gm7477
predicted gene 7477
-0.0591
54180
ENSMUSG00000116943
Gm18237
predicted gene, 18237
-0.0591
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
download
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