Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1160134
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1160134
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP018525
SRP018525_T38
Genetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-Sequencing
Transcriptome
8-cell embryo cell (8-cell embryo)
Human
Early embryonic tissue
RNA-seq
HiSeq 2000
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000198886
MT-ND4
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4
133.1376
2
ENSG00000133112
TPT1
tumor protein, translationally-controlled 1
75.4666
3
ENSG00000198888
MT-ND1
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1
66.4245
4
ENSG00000198804
MT-CO1
mitochondrially encoded cytochrome c oxidase I
63.8954
5
ENSG00000198727
MT-CYB
mitochondrially encoded cytochrome b
55.9276
6
ENSG00000198712
MT-CO2
mitochondrially encoded cytochrome c oxidase II
51.0450
7
ENSG00000210082
MT-RNR2
mitochondrially encoded 16S rRNA
47.2909
8
ENSG00000198938
MT-CO3
mitochondrially encoded cytochrome c oxidase III
42.5770
9
ENSG00000273149
novel transcript, antisense to TPT1
39.2714
10
ENSG00000203909
DPPA5
developmental pluripotency associated 5
28.8331
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285724
novel transcript
-0.0649
58502
ENSG00000285723
novel protein
-0.0649
58501
ENSG00000285722
novel transcript
-0.0649
58499
ENSG00000285720
Putative protein FAM90A16P/FAM90A17P
-0.0649
58498
ENSG00000285719
novel transcript, antisense to CD34
-0.0649
58497
ENSG00000285718
novel transcript
-0.0649
58496
ENSG00000285717
novel transcript
-0.0649
58495
ENSG00000285716
novel transcript
-0.0649
58494
ENSG00000285715
novel transcript, antisense to TACC2
-0.0649
10
ENSG00000203909
DPPA5
developmental pluripotency associated 5
28.8331
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
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