Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1160135
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1160135
Profile download
7010000000000000000000-772
Sequence Read Archive
SRP018525
SRP018525_T39
Genetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-Sequencing
Transcriptome
8-cell embryo cell (8-cell embryo)
Human
Early embryonic tissue
RNA-seq
HiSeq 2000
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000198886
MT-ND4
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4
135.0981
2
ENSG00000198804
MT-CO1
mitochondrially encoded cytochrome c oxidase I
82.2906
3
ENSG00000198888
MT-ND1
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1
79.2578
4
ENSG00000198712
MT-CO2
mitochondrially encoded cytochrome c oxidase II
65.4992
5
ENSG00000198727
MT-CYB
mitochondrially encoded cytochrome b
61.3536
6
ENSG00000133112
TPT1
tumor protein, translationally-controlled 1
44.3166
7
ENSG00000210082
MT-RNR2
mitochondrially encoded 16S rRNA
39.8331
8
ENSG00000198763
MT-ND2
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2
38.4768
9
ENSG00000198938
MT-CO3
mitochondrially encoded cytochrome c oxidase III
32.0811
10
ENSG00000112306
RPS12
ribosomal protein S12
29.6409
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285726
novel transcript
-0.0553
58502
ENSG00000285725
novel transcript
-0.0553
58501
ENSG00000285724
novel transcript
-0.0553
58500
ENSG00000285723
novel protein
-0.0553
58499
ENSG00000285722
novel transcript
-0.0553
58497
ENSG00000285720
Putative protein FAM90A16P/FAM90A17P
-0.0553
58496
ENSG00000285719
novel transcript, antisense to CD34
-0.0553
58495
ENSG00000285718
novel transcript
-0.0553
58494
ENSG00000285717
novel transcript
-0.0553
10
ENSG00000112306
RPS12
ribosomal protein S12
29.6409
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
download
Now loading...