Human Omics database for
the Generation of iPS and Normal Cells
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1268960
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1268960
Profile download
6000003010000000000000-738
Sequence Read Archive
SRP033135
SRP033135_T1
Pseudo-temporal ordering of individual cells reveals regulators of differentiation
Transcriptome
Myoblast_T0 (Skeletal muscle)
Human
Muscle
RNA-seq
HiSeq 2500
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000115414
FN1
fibronectin 1
150.0633
2
ENSG00000210082
MT-RNR2
mitochondrially encoded 16S rRNA
77.4752
3
ENSG00000198804
MT-CO1
mitochondrially encoded cytochrome c oxidase I
69.1664
4
ENSG00000198712
MT-CO2
mitochondrially encoded cytochrome c oxidase II
43.0885
5
ENSG00000251562
MALAT1
metastasis associated lung adenocarcinoma transcript 1
41.5945
6
ENSG00000156508
EEF1A1
eukaryotic translation elongation factor 1 alpha 1
41.2815
7
ENSG00000182718
ANXA2
annexin A2
39.3268
8
ENSG00000075624
ACTB
actin beta
30.1736
9
ENSG00000120708
TGFBI
transforming growth factor beta induced
29.2406
10
ENSG00000125148
MT2A
metallothionein 2A
28.9571
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285731
Novel transcript, antisense to TBC1D5
-0.0793
58502
ENSG00000285730
novel transcript
-0.0793
58501
ENSG00000285729
novel transcript
-0.0793
58500
ENSG00000285727
novel transcript
-0.0793
58499
ENSG00000285726
novel transcript
-0.0793
58498
ENSG00000285725
novel transcript
-0.0793
58497
ENSG00000285724
novel transcript
-0.0793
58496
ENSG00000285723
novel protein
-0.0793
58495
ENSG00000285722
novel transcript
-0.0793
58494
ENSG00000285720
Putative protein FAM90A16P/FAM90A17P
-0.0793
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
download
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