Human Omics database for
the Generation of iPS and Normal Cells
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1268962
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1268962
Profile download
6000003010000000000000-738
Sequence Read Archive
SRP033135
SRP033135_T3
Pseudo-temporal ordering of individual cells reveals regulators of differentiation
Transcriptome
Myoblast_T0 (Skeletal muscle)
Human
Muscle
RNA-seq
HiSeq 2500
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000210082
MT-RNR2
mitochondrially encoded 16S rRNA
74.6812
2
ENSG00000182718
ANXA2
annexin A2
67.9298
3
ENSG00000167601
AXL
AXL receptor tyrosine kinase
62.9355
4
ENSG00000075624
ACTB
actin beta
60.9816
5
ENSG00000198804
MT-CO1
mitochondrially encoded cytochrome c oxidase I
52.4877
6
ENSG00000198712
MT-CO2
mitochondrially encoded cytochrome c oxidase II
47.5663
7
ENSG00000111640
GAPDH
glyceraldehyde-3-phosphate dehydrogenase
42.7762
8
ENSG00000198727
MT-CYB
mitochondrially encoded cytochrome b
35.9008
9
ENSG00000115414
FN1
fibronectin 1
35.0113
10
ENSG00000198886
MT-ND4
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4
32.4668
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285731
Novel transcript, antisense to TBC1D5
-0.1163
58502
ENSG00000285729
novel transcript
-0.1163
58501
ENSG00000285727
novel transcript
-0.1163
58500
ENSG00000285726
novel transcript
-0.1163
58499
ENSG00000285725
novel transcript
-0.1163
58498
ENSG00000285724
novel transcript
-0.1163
58497
ENSG00000285723
novel protein
-0.1163
58496
ENSG00000285722
novel transcript
-0.1163
58495
ENSG00000285720
Putative protein FAM90A16P/FAM90A17P
-0.1163
58494
ENSG00000285719
novel transcript, antisense to CD34
-0.1163
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
download
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