Human Omics database for
the Generation of iPS and Normal Cells
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1268992
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1268992
Profile download
6000003010000000000000-738
Sequence Read Archive
SRP033135
SRP033135_T28
Pseudo-temporal ordering of individual cells reveals regulators of differentiation
Transcriptome
Myoblast_T0 (Skeletal muscle)
Human
Muscle
RNA-seq
HiSeq 2500
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000210082
MT-RNR2
mitochondrially encoded 16S rRNA
98.3400
2
ENSG00000156508
EEF1A1
eukaryotic translation elongation factor 1 alpha 1
82.9597
3
ENSG00000182718
ANXA2
annexin A2
67.4654
4
ENSG00000167601
AXL
AXL receptor tyrosine kinase
49.1242
5
ENSG00000184009
ACTG1
actin gamma 1
42.6392
6
ENSG00000100316
RPL3
ribosomal protein L3
42.5427
7
ENSG00000125148
MT2A
metallothionein 2A
40.3114
8
ENSG00000087086
FTL
ferritin light chain
40.2360
9
ENSG00000111640
GAPDH
glyceraldehyde-3-phosphate dehydrogenase
37.9995
10
ENSG00000196230
TUBB
tubulin beta class I
37.2592
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285743
novel transcript, LINP1-LINC00707 readthrough
-0.0653
58502
ENSG00000285742
novel transcript
-0.0653
58501
ENSG00000285741
novel transcript
-0.0653
58500
ENSG00000285740
novel transcript
-0.0653
58499
ENSG00000285739
novel transcript, antisense to NRG3
-0.0653
58498
ENSG00000285738
Novel transcript
-0.0653
58497
ENSG00000285737
LINC02680
long intergenic non-protein coding RNA 2680
-0.0653
58496
ENSG00000285736
Novel transcript
-0.0653
58495
ENSG00000285735
LINC02717
long intergenic non-protein coding RNA 2717
-0.0653
58494
ENSG00000285734
novel transcript, antisense to CACNA1C
-0.0653
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
download
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