Human Omics database for
the Generation of iPS and Normal Cells
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1268999
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1268999
Profile download
6000003010000000000000-738
Sequence Read Archive
SRP033135
SRP033135_T35
Pseudo-temporal ordering of individual cells reveals regulators of differentiation
Transcriptome
Myoblast_T0 (Skeletal muscle)
Human
Muscle
RNA-seq
HiSeq 2500
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000111640
GAPDH
glyceraldehyde-3-phosphate dehydrogenase
56.6196
2
ENSG00000075624
ACTB
actin beta
37.7302
3
ENSG00000102265
TIMP1
TIMP metallopeptidase inhibitor 1
37.7302
4
ENSG00000258017
novel transcript, antisense to TUBA1B
37.7302
5
ENSG00000260032
NORAD
non-coding RNA activated by DNA damage
37.7302
6
ENSG00000003756
RBM5
RNA binding motif protein 5
18.8408
7
ENSG00000005022
SLC25A5
solute carrier family 25 member 5
18.8408
8
ENSG00000021574
SPAST
spastin
18.8408
9
ENSG00000023287
RB1CC1
RB1 inducible coiled-coil 1
18.8408
10
ENSG00000023572
GLRX2
glutaredoxin 2
18.8408
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285747
novel transcript
-0.0486
58502
ENSG00000285746
putative UPF0607 protein ENSP00000383144
-0.0486
58501
ENSG00000285745
general transcription factor IIH subunit 5 (GTF2H5) pseudogene
-0.0486
58500
ENSG00000285744
novel transcript
-0.0486
58499
ENSG00000285743
novel transcript, LINP1-LINC00707 readthrough
-0.0486
58498
ENSG00000285742
novel transcript
-0.0486
58497
ENSG00000285741
novel transcript
-0.0486
58496
ENSG00000285740
novel transcript
-0.0486
58495
ENSG00000285739
novel transcript, antisense to NRG3
-0.0486
58494
ENSG00000285738
Novel transcript
-0.0486
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
download
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