Human Omics database for
the Generation of iPS and Normal Cells
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1269049
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1269049
Profile download
6000003010000000000000-738
Sequence Read Archive
SRP033135
SRP033135_T79
Pseudo-temporal ordering of individual cells reveals regulators of differentiation
Transcriptome
Myoblast_T0 (Skeletal muscle)
Human
Muscle
RNA-seq
HiSeq 2500
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000210082
MT-RNR2
mitochondrially encoded 16S rRNA
173.1154
2
ENSG00000111640
GAPDH
glyceraldehyde-3-phosphate dehydrogenase
39.8162
3
ENSG00000231500
RPS18
ribosomal protein S18
36.5143
4
ENSG00000125148
MT2A
metallothionein 2A
35.5711
5
ENSG00000198886
MT-ND4
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4
32.2667
6
ENSG00000087086
FTL
ferritin light chain
30.0689
7
ENSG00000198712
MT-CO2
mitochondrially encoded cytochrome c oxidase II
27.9714
8
ENSG00000198938
MT-CO3
mitochondrially encoded cytochrome c oxidase III
26.9394
9
ENSG00000164111
ANXA5
annexin A5
26.8519
10
ENSG00000211459
MT-RNR1
mitochondrially encoded 12S rRNA
25.8392
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285746
putative UPF0607 protein ENSP00000383144
-0.0455
58502
ENSG00000285745
general transcription factor IIH subunit 5 (GTF2H5) pseudogene
-0.0455
58501
ENSG00000285744
novel transcript
-0.0455
58500
ENSG00000285743
novel transcript, LINP1-LINC00707 readthrough
-0.0455
58499
ENSG00000285742
novel transcript
-0.0455
58498
ENSG00000285741
novel transcript
-0.0455
58497
ENSG00000285740
novel transcript
-0.0455
58496
ENSG00000285739
novel transcript, antisense to NRG3
-0.0455
58495
ENSG00000285738
Novel transcript
-0.0455
58494
ENSG00000285737
LINC02680
long intergenic non-protein coding RNA 2680
-0.0455
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
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