Human Omics database for
the Generation of iPS and Normal Cells
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1269157
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1269157
Profile download
6000003010000000000000-738
Sequence Read Archive
SRP033135
SRP033135_T165
Pseudo-temporal ordering of individual cells reveals regulators of differentiation
Transcriptome
Myoblast_T48 (Skeletal muscle)
Human
Muscle
RNA-seq
HiSeq 2500
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000159251
ACTC1
actin alpha cardiac muscle 1
179.8361
2
ENSG00000167552
TUBA1A
tubulin alpha 1a
60.4890
3
ENSG00000198804
MT-CO1
mitochondrially encoded cytochrome c oxidase I
58.0904
4
ENSG00000210082
MT-RNR2
mitochondrially encoded 16S rRNA
47.9598
5
ENSG00000159173
TNNI1
troponin I1, slow skeletal type
34.8990
6
ENSG00000155657
TTN
titin
31.6606
7
ENSG00000124491
F13A1
coagulation factor XIII A chain
31.5087
8
ENSG00000133055
MYBPH
myosin binding protein H
31.2452
9
ENSG00000198712
MT-CO2
mitochondrially encoded cytochrome c oxidase II
29.1592
10
ENSG00000156508
EEF1A1
eukaryotic translation elongation factor 1 alpha 1
26.3496
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285741
novel transcript
-0.0667
58502
ENSG00000285740
novel transcript
-0.0667
58501
ENSG00000285739
novel transcript, antisense to NRG3
-0.0667
58500
ENSG00000285738
Novel transcript
-0.0667
58499
ENSG00000285737
LINC02680
long intergenic non-protein coding RNA 2680
-0.0667
58498
ENSG00000285736
Novel transcript
-0.0667
58497
ENSG00000285735
LINC02717
long intergenic non-protein coding RNA 2717
-0.0667
58496
ENSG00000285734
novel transcript, antisense to CACNA1C
-0.0667
58495
ENSG00000285733
novel protein
-0.0667
58494
ENSG00000285732
novel transcript, antisense to ABCD2
-0.0667
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
download
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