Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1269189

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269189


Profile download
6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T194Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 96.0223
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 75.3745
3 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S rRNA 66.7543
4 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 54.4176
5 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 50.3147
6 ENSG00000088448 ANKRD10 ankyrin repeat domain 10 36.0180
7 ENSG00000115414 FN1 fibronectin 1 33.5239
8 ENSG00000245532 NEAT1 nuclear paraspeckle assembly transcript 1 31.5779
9 ENSG00000184009 ACTG1 actin gamma 1 29.3298
10 ENSG00000091986 CCDC80 coiled-coil domain containing 80 28.5640

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285741 novel transcript -0.1068
58502 ENSG00000285740 novel transcript -0.1068
58501 ENSG00000285739 novel transcript, antisense to NRG3 -0.1068
58500 ENSG00000285738 Novel transcript -0.1068
58499 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.1068
58498 ENSG00000285736 Novel transcript -0.1068
58497 ENSG00000285735 LINC02717 long intergenic non-protein coding RNA 2717 -0.1068
58496 ENSG00000285734 novel transcript, antisense to CACNA1C -0.1068
58495 ENSG00000285733 novel protein -0.1068
58494 ENSG00000285732 novel transcript, antisense to ABCD2 -0.1068

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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