Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1269216

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1269216


Profile download
6000003010000000000000-738Sequence Read ArchiveSRP033135SRP033135_T220Pseudo-temporal ordering of individual cells reveals regulators of differentiationTranscriptomeMyoblast_T48 (Skeletal muscle)HumanMuscleRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 95.4650
2 ENSG00000115414 FN1 fibronectin 1 77.0099
3 ENSG00000075624 ACTB actin beta 67.4133
4 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 66.9542
5 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S rRNA 62.3120
6 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 59.5134
7 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 53.0018
8 ENSG00000164692 COL1A2 collagen type I alpha 2 chain 38.0247
9 ENSG00000108821 COL1A1 collagen type I alpha 1 chain 33.5000
10 ENSG00000107796 ACTA2 actin alpha 2, smooth muscle 33.4890

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285742 novel transcript -0.0901
58502 ENSG00000285741 novel transcript -0.0901
58501 ENSG00000285740 novel transcript -0.0901
58500 ENSG00000285739 novel transcript, antisense to NRG3 -0.0901
58499 ENSG00000285738 Novel transcript -0.0901
58498 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.0901
58497 ENSG00000285736 Novel transcript -0.0901
58496 ENSG00000285735 LINC02717 long intergenic non-protein coding RNA 2717 -0.0901
58495 ENSG00000285734 novel transcript, antisense to CACNA1C -0.0901
58494 ENSG00000285733 novel protein -0.0901

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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