Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1269221
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1269221
Profile download
6000003010000000000000-738
Sequence Read Archive
SRP033135
SRP033135_T223
Pseudo-temporal ordering of individual cells reveals regulators of differentiation
Transcriptome
Myoblast_T48 (Skeletal muscle)
Human
Muscle
RNA-seq
HiSeq 2500
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000159251
ACTC1
actin alpha cardiac muscle 1
82.3496
2
ENSG00000210082
MT-RNR2
mitochondrially encoded 16S rRNA
76.0668
3
ENSG00000251562
MALAT1
metastasis associated lung adenocarcinoma transcript 1
73.4239
4
ENSG00000075624
ACTB
actin beta
71.3357
5
ENSG00000198804
MT-CO1
mitochondrially encoded cytochrome c oxidase I
69.5955
6
ENSG00000137801
THBS1
thrombospondin 1
58.4112
7
ENSG00000115414
FN1
fibronectin 1
45.4903
8
ENSG00000107796
ACTA2
actin alpha 2, smooth muscle
39.0589
9
ENSG00000182718
ANXA2
annexin A2
37.3296
10
ENSG00000156508
EEF1A1
eukaryotic translation elongation factor 1 alpha 1
31.6595
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285744
novel transcript
-0.0808
58502
ENSG00000285743
novel transcript, LINP1-LINC00707 readthrough
-0.0808
58501
ENSG00000285742
novel transcript
-0.0808
58500
ENSG00000285741
novel transcript
-0.0808
58499
ENSG00000285740
novel transcript
-0.0808
58498
ENSG00000285739
novel transcript, antisense to NRG3
-0.0808
58497
ENSG00000285738
Novel transcript
-0.0808
58496
ENSG00000285737
LINC02680
long intergenic non-protein coding RNA 2680
-0.0808
58495
ENSG00000285736
Novel transcript
-0.0808
58494
ENSG00000285735
LINC02717
long intergenic non-protein coding RNA 2717
-0.0808
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
download
Now loading...
