Human Omics database for
the Generation of iPS and Normal Cells
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1269259
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1269259
Profile download
6000003010000000000000-738
Sequence Read Archive
SRP033135
SRP033135_T256
Pseudo-temporal ordering of individual cells reveals regulators of differentiation
Transcriptome
Myoblast_T72 (Skeletal muscle)
Human
Muscle
RNA-seq
HiSeq 2000
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000210082
MT-RNR2
mitochondrially encoded 16S rRNA
108.5826
2
ENSG00000251562
MALAT1
metastasis associated lung adenocarcinoma transcript 1
81.2296
3
ENSG00000182718
ANXA2
annexin A2
72.6370
4
ENSG00000159251
ACTC1
actin alpha cardiac muscle 1
64.6976
5
ENSG00000198804
MT-CO1
mitochondrially encoded cytochrome c oxidase I
64.3605
6
ENSG00000075624
ACTB
actin beta
45.2313
7
ENSG00000198712
MT-CO2
mitochondrially encoded cytochrome c oxidase II
39.5204
8
ENSG00000113140
SPARC
secreted protein acidic and cysteine rich
38.2402
9
ENSG00000137801
THBS1
thrombospondin 1
34.5735
10
ENSG00000156508
EEF1A1
eukaryotic translation elongation factor 1 alpha 1
32.7507
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285736
Novel transcript
-0.0919
58502
ENSG00000285735
LINC02717
long intergenic non-protein coding RNA 2717
-0.0919
58501
ENSG00000285734
novel transcript, antisense to CACNA1C
-0.0919
58500
ENSG00000285733
novel protein
-0.0919
58499
ENSG00000285732
novel transcript, antisense to ABCD2
-0.0919
58498
ENSG00000285731
Novel transcript, antisense to TBC1D5
-0.0919
58497
ENSG00000285730
novel transcript
-0.0919
58496
ENSG00000285729
novel transcript
-0.0919
58495
ENSG00000285728
novel transcript, antisense to PPIH
-0.0919
58494
ENSG00000285727
novel transcript
-0.0919
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
download
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