SHOGoiN Cell Transcriptome: GSM1280090-1

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1280090-1


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7020001000000000000000-715Sequence Read ArchiveSRP022764SRP022764_T55Quantitative single-cell RNA-seqTranscriptomeEmbryonic stem cellMouseEarly embryonic tissueRNA-SeqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 220.8559
2 ENSMUSG00000064337 mt-Rnr1 mitochondrially encoded 12S rRNA 66.9698
3 ENSMUSG00000098178 Gm42418 predicted gene, 42418 17.4579
4 ENSMUSG00000064367 mt-Nd5 mitochondrially encoded NADH dehydrogenase 5 15.8672
5 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 13.9585
6 ENSMUSG00000097971 Gm26917 predicted gene, 26917 10.8351
7 ENSMUSG00000023944 Hsp90ab1 heat shock protein 90 alpha (cytosolic), class B member 1 9.0709
8 ENSMUSG00000064370 mt-Cytb mitochondrially encoded cytochrome b 7.6538
9 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 7.5670
10 ENSMUSG00000064345 mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 6.2945

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
54189 ENSMUSG00000116986 Gm17804 predicted gene, 17804 -0.0101
54188 ENSMUSG00000116985 Gm49669 predicted gene, 49669 -0.0101
54187 ENSMUSG00000116984 4930549P19Rik RIKEN cDNA 4930549P19 gene -0.0101
54186 ENSMUSG00000116983 4930553J12Rik RIKEN cDNA 4930553J12 gene -0.0101
54185 ENSMUSG00000116982 4930567J20Rik RIKEN cDNA 4930567J20 gene -0.0101
54184 ENSMUSG00000116981 Gm49611 predicted gene, 49611 -0.0101
54183 ENSMUSG00000116980 Gm49597 predicted gene, 49597 -0.0101
54182 ENSMUSG00000116979 Gm32865 predicted gene, 32865 -0.0101
54181 ENSMUSG00000116978 Gm49765 predicted gene, 49765 -0.0101
54180 ENSMUSG00000116977 Gm49637 predicted gene, 49637 -0.0101

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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