Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677476

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677476


Profile download
7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T4The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 95.3126
2 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 56.2407
3 ENSG00000196230 TUBB tubulin beta class I 43.7239
4 ENSG00000070756 PABPC1 poly(A) binding protein cytoplasmic 1 43.0545
5 ENSG00000152558 TMEM123 transmembrane protein 123 42.6893
6 ENSG00000133112 TPT1 tumor protein, translationally-controlled 1 36.7251
7 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 30.2739
8 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 29.4016
9 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 28.4076
10 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 27.6367

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285742 novel transcript -0.1356
58502 ENSG00000285741 novel transcript -0.1356
58501 ENSG00000285740 novel transcript -0.1356
58500 ENSG00000285739 novel transcript, antisense to NRG3 -0.1356
58499 ENSG00000285738 Novel transcript -0.1356
58498 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.1356
58497 ENSG00000285736 Novel transcript -0.1356
58496 ENSG00000285735 LINC02717 long intergenic non-protein coding RNA 2717 -0.1356
58495 ENSG00000285734 novel transcript, antisense to CACNA1C -0.1356
58494 ENSG00000285733 novel protein -0.1356

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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