Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677506

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677506


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T34The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 133.9067
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 125.0528
3 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 79.5303
4 ENSG00000196230 TUBB tubulin beta class I 39.2067
5 ENSG00000174444 RPL4 ribosomal protein L4 37.7056
6 ENSG00000184009 ACTG1 actin gamma 1 36.3855
7 ENSG00000109971 HSPA8 heat shock protein family A (Hsp70) member 8 29.0894
8 ENSG00000075624 ACTB actin beta 29.0113
9 ENSG00000089157 RPLP0 ribosomal protein lateral stalk subunit P0 24.4619
10 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 22.2724

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285741 novel transcript -0.0772
58502 ENSG00000285740 novel transcript -0.0772
58501 ENSG00000285739 novel transcript, antisense to NRG3 -0.0772
58500 ENSG00000285738 Novel transcript -0.0772
58499 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.0772
58498 ENSG00000285736 Novel transcript -0.0772
58497 ENSG00000285735 LINC02717 long intergenic non-protein coding RNA 2717 -0.0772
58496 ENSG00000285734 novel transcript, antisense to CACNA1C -0.0772
58495 ENSG00000285733 novel protein -0.0772
58494 ENSG00000285732 novel transcript, antisense to ABCD2 -0.0772

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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