Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1677516
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1677516
Profile download
7000000000000000000000-766
Sequence Read Archive
SRP050499
SRP050499_T44
The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells
Transcriptome
Primordial germ cell
Human
Early embryonic tissue
RNA-seq
HiSeq 2500
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000156508
EEF1A1
eukaryotic translation elongation factor 1 alpha 1
199.8058
2
ENSG00000089157
RPLP0
ribosomal protein lateral stalk subunit P0
46.2034
3
ENSG00000198804
MT-CO1
mitochondrially encoded cytochrome c oxidase I
43.8450
4
ENSG00000174444
RPL4
ribosomal protein L4
42.9836
5
ENSG00000133112
TPT1
tumor protein, translationally-controlled 1
31.7144
6
ENSG00000184009
ACTG1
actin gamma 1
30.5638
7
ENSG00000196230
TUBB
tubulin beta class I
26.5478
8
ENSG00000204628
RACK1
receptor for activated C kinase 1
23.6474
9
ENSG00000142541
RPL13A
ribosomal protein L13a
20.7089
10
ENSG00000198886
MT-ND4
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4
19.1833
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285744
novel transcript
-0.0639
58502
ENSG00000285743
novel transcript, LINP1-LINC00707 readthrough
-0.0639
58501
ENSG00000285742
novel transcript
-0.0639
58500
ENSG00000285741
novel transcript
-0.0639
58499
ENSG00000285740
novel transcript
-0.0639
58498
ENSG00000285739
novel transcript, antisense to NRG3
-0.0639
58497
ENSG00000285738
Novel transcript
-0.0639
58496
ENSG00000285737
LINC02680
long intergenic non-protein coding RNA 2680
-0.0639
58495
ENSG00000285736
Novel transcript
-0.0639
58494
ENSG00000285735
LINC02717
long intergenic non-protein coding RNA 2717
-0.0639
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
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