Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677526

Expression Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Expression Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1677526 Profile download	7000000000000000000000-766	Sequence Read Archive	SRP050499	SRP050499_T54	The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells	Transcriptome	Primordial germ cell	Human	Early embryonic tissue	RNA-seq	HiSeq 2500	Sequence

Histogram (Expression count)

Top 10 up-regulated genes

Rank	ENSG	Gene symbol	Description	Z-score
1	ENSG00000198804	MT-CO1	mitochondrially encoded cytochrome c oxidase I	160.4346
2	ENSG00000198886	MT-ND4	mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4	74.8811
3	ENSG00000156508	EEF1A1	eukaryotic translation elongation factor 1 alpha 1	72.1715
4	ENSG00000174444	RPL4	ribosomal protein L4	41.2000
5	ENSG00000080824	HSP90AA1	heat shock protein 90 alpha family class A member 1	33.5598
6	ENSG00000198888	MT-ND1	mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1	31.0924
7	ENSG00000184009	ACTG1	actin gamma 1	28.9083
8	ENSG00000133112	TPT1	tumor protein, translationally-controlled 1	28.2186
9	ENSG00000089157	RPLP0	ribosomal protein lateral stalk subunit P0	27.1635
10	ENSG00000137154	RPS6	ribosomal protein S6	24.7248

Bottom 10 down-regulated genes

Rank	ENSG	Gene symbol	Description	Z-score
58503	ENSG00000285740		novel transcript	-0.0885
58502	ENSG00000285739		novel transcript, antisense to NRG3	-0.0885
58501	ENSG00000285738		Novel transcript	-0.0885
58500	ENSG00000285737	LINC02680	long intergenic non-protein coding RNA 2680	-0.0885
58499	ENSG00000285736		Novel transcript	-0.0885
58498	ENSG00000285735	LINC02717	long intergenic non-protein coding RNA 2717	-0.0885
58497	ENSG00000285734		novel transcript, antisense to CACNA1C	-0.0885
58496	ENSG00000285733		novel protein	-0.0885
58495	ENSG00000285732		novel transcript, antisense to ABCD2	-0.0885
58494	ENSG00000285731		Novel transcript, antisense to TBC1D5	-0.0885

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	Z-score

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