Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677542

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677542


Profile download
7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T70The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 76.5107
2 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 72.6300
3 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 70.0330
4 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 63.5758
5 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 54.3270
6 ENSG00000196230 TUBB tubulin beta class I 46.5999
7 ENSG00000133112 TPT1 tumor protein, translationally-controlled 1 45.0234
8 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 41.3051
9 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S rRNA 37.2986
10 ENSG00000198899 MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 37.1819

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285736 Novel transcript -0.1082
58502 ENSG00000285735 LINC02717 long intergenic non-protein coding RNA 2717 -0.1082
58501 ENSG00000285734 novel transcript, antisense to CACNA1C -0.1082
58500 ENSG00000285733 novel protein -0.1082
58499 ENSG00000285732 novel transcript, antisense to ABCD2 -0.1082
58498 ENSG00000285731 Novel transcript, antisense to TBC1D5 -0.1082
58497 ENSG00000285730 novel transcript -0.1082
58496 ENSG00000285729 novel transcript -0.1082
58495 ENSG00000285728 novel transcript, antisense to PPIH -0.1082
58494 ENSG00000285727 novel transcript -0.1082

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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