Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677543

Expression Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Expression Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1677543 Profile download	7000000000000000000000-766	Sequence Read Archive	SRP050499	SRP050499_T71	The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells	Transcriptome	Primordial germ cell	Human	Early embryonic tissue	RNA-seq	HiSeq 2500	Sequence

Histogram (Expression count)

Top 10 up-regulated genes

Rank	ENSG	Gene symbol	Description	Z-score
1	ENSG00000156508	EEF1A1	eukaryotic translation elongation factor 1 alpha 1	87.3558
2	ENSG00000133112	TPT1	tumor protein, translationally-controlled 1	60.0253
3	ENSG00000196230	TUBB	tubulin beta class I	46.3662
4	ENSG00000168028	RPSA	ribosomal protein SA	45.0916
5	ENSG00000089157	RPLP0	ribosomal protein lateral stalk subunit P0	42.5958
6	ENSG00000070756	PABPC1	poly(A) binding protein cytoplasmic 1	39.0104
7	ENSG00000080824	HSP90AA1	heat shock protein 90 alpha family class A member 1	38.1387
8	ENSG00000273149		novel transcript, antisense to TPT1	30.9720
9	ENSG00000137154	RPS6	ribosomal protein S6	30.3758
10	ENSG00000174444	RPL4	ribosomal protein L4	30.3306

Bottom 10 down-regulated genes

Rank	ENSG	Gene symbol	Description	Z-score
58503	ENSG00000285742		novel transcript	-0.1371
58502	ENSG00000285741		novel transcript	-0.1371
58501	ENSG00000285740		novel transcript	-0.1371
58500	ENSG00000285739		novel transcript, antisense to NRG3	-0.1371
58499	ENSG00000285738		Novel transcript	-0.1371
58498	ENSG00000285737	LINC02680	long intergenic non-protein coding RNA 2680	-0.1371
58497	ENSG00000285736		Novel transcript	-0.1371
58496	ENSG00000285735	LINC02717	long intergenic non-protein coding RNA 2717	-0.1371
58495	ENSG00000285734		novel transcript, antisense to CACNA1C	-0.1371
58494	ENSG00000285733		novel protein	-0.1371

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	Z-score

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