Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1677543
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1677543
Profile download
7000000000000000000000-766
Sequence Read Archive
SRP050499
SRP050499_T71
The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells
Transcriptome
Primordial germ cell
Human
Early embryonic tissue
RNA-seq
HiSeq 2500
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000156508
EEF1A1
eukaryotic translation elongation factor 1 alpha 1
87.3558
2
ENSG00000133112
TPT1
tumor protein, translationally-controlled 1
60.0253
3
ENSG00000196230
TUBB
tubulin beta class I
46.3662
4
ENSG00000168028
RPSA
ribosomal protein SA
45.0916
5
ENSG00000089157
RPLP0
ribosomal protein lateral stalk subunit P0
42.5958
6
ENSG00000070756
PABPC1
poly(A) binding protein cytoplasmic 1
39.0104
7
ENSG00000080824
HSP90AA1
heat shock protein 90 alpha family class A member 1
38.1387
8
ENSG00000273149
novel transcript, antisense to TPT1
30.9720
9
ENSG00000137154
RPS6
ribosomal protein S6
30.3758
10
ENSG00000174444
RPL4
ribosomal protein L4
30.3306
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285742
novel transcript
-0.1371
58502
ENSG00000285741
novel transcript
-0.1371
58501
ENSG00000285740
novel transcript
-0.1371
58500
ENSG00000285739
novel transcript, antisense to NRG3
-0.1371
58499
ENSG00000285738
Novel transcript
-0.1371
58498
ENSG00000285737
LINC02680
long intergenic non-protein coding RNA 2680
-0.1371
58497
ENSG00000285736
Novel transcript
-0.1371
58496
ENSG00000285735
LINC02717
long intergenic non-protein coding RNA 2717
-0.1371
58495
ENSG00000285734
novel transcript, antisense to CACNA1C
-0.1371
58494
ENSG00000285733
novel protein
-0.1371
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
download
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