Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1677549
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1677549
Profile download
7000000000000000000000-766
Sequence Read Archive
SRP050499
SRP050499_T77
The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells
Transcriptome
Primordial germ cell
Human
Early embryonic tissue
RNA-seq
HiSeq 2500
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000156508
EEF1A1
eukaryotic translation elongation factor 1 alpha 1
63.2972
2
ENSG00000196230
TUBB
tubulin beta class I
61.5294
3
ENSG00000198804
MT-CO1
mitochondrially encoded cytochrome c oxidase I
52.4739
4
ENSG00000198886
MT-ND4
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4
52.0076
5
ENSG00000133112
TPT1
tumor protein, translationally-controlled 1
42.7352
6
ENSG00000210082
MT-RNR2
mitochondrially encoded 16S rRNA
41.5314
7
ENSG00000133606
MKRN1
makorin ring finger protein 1
26.4787
8
ENSG00000184009
ACTG1
actin gamma 1
26.2184
9
ENSG00000080824
HSP90AA1
heat shock protein 90 alpha family class A member 1
24.5808
10
ENSG00000198786
MT-ND5
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5
23.7458
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285738
Novel transcript
-0.1456
58502
ENSG00000285737
LINC02680
long intergenic non-protein coding RNA 2680
-0.1456
58501
ENSG00000285736
Novel transcript
-0.1456
58500
ENSG00000285735
LINC02717
long intergenic non-protein coding RNA 2717
-0.1456
58499
ENSG00000285734
novel transcript, antisense to CACNA1C
-0.1456
58498
ENSG00000285733
novel protein
-0.1456
58497
ENSG00000285732
novel transcript, antisense to ABCD2
-0.1456
58496
ENSG00000285731
Novel transcript, antisense to TBC1D5
-0.1456
58495
ENSG00000285730
novel transcript
-0.1456
58494
ENSG00000285729
novel transcript
-0.1456
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
download
Now loading...
