Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1677582
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1677582
Profile download
7000000000000000000000-766
Sequence Read Archive
SRP050499
SRP050499_T110
The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells
Transcriptome
Primordial germ cell
Human
Early embryonic tissue
RNA-seq
HiSeq 2500
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000198804
MT-CO1
mitochondrially encoded cytochrome c oxidase I
130.7455
2
ENSG00000198886
MT-ND4
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4
87.0494
3
ENSG00000080824
HSP90AA1
heat shock protein 90 alpha family class A member 1
61.2554
4
ENSG00000156508
EEF1A1
eukaryotic translation elongation factor 1 alpha 1
45.2950
5
ENSG00000184009
ACTG1
actin gamma 1
39.3586
6
ENSG00000198763
MT-ND2
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2
38.2438
7
ENSG00000198888
MT-ND1
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1
38.1648
8
ENSG00000198786
MT-ND5
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5
33.6034
9
ENSG00000089157
RPLP0
ribosomal protein lateral stalk subunit P0
31.2205
10
ENSG00000198727
MT-CYB
mitochondrially encoded cytochrome b
29.6551
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285627
novel transcript, antisense to ADIPOR2
-0.1244
58502
ENSG00000285626
NA
-0.1244
58501
ENSG00000285625
novel protein
-0.1244
58500
ENSG00000285624
novel transcript
-0.1244
58499
ENSG00000285623
novel transcript
-0.1244
58498
ENSG00000285622
novel transcript
-0.1244
58497
ENSG00000285621
novel transcript, antisense to STARD13
-0.1244
58496
ENSG00000285620
Putative protein FAM90A16P/FAM90A17P
-0.1244
58495
ENSG00000285619
Novel transcript, antisense to EEFSEC
-0.1244
58494
ENSG00000285618
novel transcript, antisense to ADGRV1
-0.1244
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
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