Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677595

Expression Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Expression Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1677595 Profile download	7000000000000000000000-766	Sequence Read Archive	SRP050499	SRP050499_T123	The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells	Transcriptome	Primordial germ cell	Human	Early embryonic tissue	RNA-seq	HiSeq 2500	Sequence

Histogram (Expression count)

Top 10 up-regulated genes

Rank	ENSG	Gene symbol	Description	Z-score
1	ENSG00000198804	MT-CO1	mitochondrially encoded cytochrome c oxidase I	173.2328
2	ENSG00000198886	MT-ND4	mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4	118.9914
3	ENSG00000198888	MT-ND1	mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1	79.5078
4	ENSG00000210082	MT-RNR2	mitochondrially encoded 16S rRNA	41.6657
5	ENSG00000198763	MT-ND2	mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2	40.1402
6	ENSG00000198727	MT-CYB	mitochondrially encoded cytochrome b	40.0979
7	ENSG00000198786	MT-ND5	mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5	31.7969
8	ENSG00000198899	MT-ATP6	mitochondrially encoded ATP synthase membrane subunit 6	20.6078
9	ENSG00000198712	MT-CO2	mitochondrially encoded cytochrome c oxidase II	17.1030
10	ENSG00000198938	MT-CO3	mitochondrially encoded cytochrome c oxidase III	13.7116

Bottom 10 down-regulated genes

Rank	ENSG	Gene symbol	Description	Z-score
58503	ENSG00000285743		novel transcript, LINP1-LINC00707 readthrough	-0.0313
58502	ENSG00000285742		novel transcript	-0.0313
58501	ENSG00000285741		novel transcript	-0.0313
58500	ENSG00000285740		novel transcript	-0.0313
58499	ENSG00000285739		novel transcript, antisense to NRG3	-0.0313
58498	ENSG00000285738		Novel transcript	-0.0313
58497	ENSG00000285737	LINC02680	long intergenic non-protein coding RNA 2680	-0.0313
58496	ENSG00000285736		Novel transcript	-0.0313
58495	ENSG00000285735	LINC02717	long intergenic non-protein coding RNA 2717	-0.0313
58494	ENSG00000285734		novel transcript, antisense to CACNA1C	-0.0313

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	Z-score

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