Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1677595
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1677595
Profile download
7000000000000000000000-766
Sequence Read Archive
SRP050499
SRP050499_T123
The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells
Transcriptome
Primordial germ cell
Human
Early embryonic tissue
RNA-seq
HiSeq 2500
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000198804
MT-CO1
mitochondrially encoded cytochrome c oxidase I
173.2328
2
ENSG00000198886
MT-ND4
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4
118.9914
3
ENSG00000198888
MT-ND1
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1
79.5078
4
ENSG00000210082
MT-RNR2
mitochondrially encoded 16S rRNA
41.6657
5
ENSG00000198763
MT-ND2
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2
40.1402
6
ENSG00000198727
MT-CYB
mitochondrially encoded cytochrome b
40.0979
7
ENSG00000198786
MT-ND5
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5
31.7969
8
ENSG00000198899
MT-ATP6
mitochondrially encoded ATP synthase membrane subunit 6
20.6078
9
ENSG00000198712
MT-CO2
mitochondrially encoded cytochrome c oxidase II
17.1030
10
ENSG00000198938
MT-CO3
mitochondrially encoded cytochrome c oxidase III
13.7116
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285743
novel transcript, LINP1-LINC00707 readthrough
-0.0313
58502
ENSG00000285742
novel transcript
-0.0313
58501
ENSG00000285741
novel transcript
-0.0313
58500
ENSG00000285740
novel transcript
-0.0313
58499
ENSG00000285739
novel transcript, antisense to NRG3
-0.0313
58498
ENSG00000285738
Novel transcript
-0.0313
58497
ENSG00000285737
LINC02680
long intergenic non-protein coding RNA 2680
-0.0313
58496
ENSG00000285736
Novel transcript
-0.0313
58495
ENSG00000285735
LINC02717
long intergenic non-protein coding RNA 2717
-0.0313
58494
ENSG00000285734
novel transcript, antisense to CACNA1C
-0.0313
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
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