SHOGoiN Cell Transcriptome: GSM1677719

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677719


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7100400010000000000000-875Sequence Read ArchiveSRP050499SRP050499_T247The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomeGonadal somatic cellHumanGenitaliaRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 174.8970
2 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 79.0182
3 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 51.6999
4 ENSG00000113140 SPARC secreted protein acidic and cysteine rich 35.7335
5 ENSG00000133112 TPT1 tumor protein, translationally-controlled 1 34.1668
6 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 33.6428
7 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S RNA 32.8193
8 ENSG00000164692 COL1A2 collagen type I alpha 2 chain 26.4723
9 ENSG00000038427 VCAN versican 23.1892
10 ENSG00000198899 MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 21.7562

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58735 ENSG00000285994 novel transcript, sense intronic to CAMK1D -0.0867
58734 ENSG00000285993 novel transcript, antisense to RNF165 -0.0867
58733 ENSG00000285992 novel transcript -0.0867
58732 ENSG00000285991 novel transcript -0.0867
58731 ENSG00000285990 neurobeachin (NBEA) pseudogene -0.0867
58730 ENSG00000285989 TEC -0.0867
58729 ENSG00000285988 novel transcript, LINP1-LINC00707 readthrough -0.0867
58728 ENSG00000285987 NA -0.0867
58727 ENSG00000285986 complement factor H related 3 (CFHR3) pseudogene -0.0867
58726 ENSG00000285985 NA -0.0867

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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