SHOGoiN Cell Transcriptome: GSM1822022

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1822022


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6000001010000000000000-734Sequence Read ArchiveSRP061185SRP061185_T1Single-cell RNA-seq of bone marrow-derived mesenchymal stem cells reveals unique profiles of lineage primingTranscriptomeMesenchymal stem cell (MSC)MouseBone marrowRNA-SeqMiSeqSequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000029580 Actb actin, beta 132.9112
2 ENSMUSG00000092341 Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 126.0871
3 ENSMUSG00000102349 Gm37376 predicted gene, 37376 82.2173
4 ENSMUSG00000020368 Canx calnexin 31.2796
5 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 24.9429
6 ENSMUSG00000021427 Ssr1 signal sequence receptor, alpha 23.5618
7 ENSMUSG00000001131 Timp1 tissue inhibitor of metalloproteinase 1 21.0433
8 ENSMUSG00000030245 Golt1b golgi transport 1B 20.7184
9 ENSMUSG00000060935 Tmem263 transmembrane protein 263 19.4998
10 ENSMUSG00000017009 Sdc4 syndecan 4 19.2561

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
54524 ENSMUSG00000117330 ribosomal protein L18A (Rpl18a) pseudogene -0.0791
54523 ENSMUSG00000117329 zinc finger protein 541 (Zfp541) pseudogene -0.0791
54522 ENSMUSG00000117328 novel transcript, antisense to Smoc2 -0.0791
54521 ENSMUSG00000117327 NA -0.0791
54520 ENSMUSG00000117326 zinc ribbon domain containing 1, antisense (Znrd1as) pseudogene -0.0791
54519 ENSMUSG00000117325 Opa interacting protein 5 (Oip5) pseudogene -0.0791
54518 ENSMUSG00000117324 novel transcript, antisense to Dscam -0.0791
54517 ENSMUSG00000117323 novel transcript -0.0791
54516 ENSMUSG00000117322 novel transcript, antisense to Zfp213 -0.0791
54515 ENSMUSG00000117321 ribosomal protein S27 (Rps27) pseudogene -0.0791

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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