Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1822026

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1822026


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6000001010000000000000-734Sequence Read ArchiveSRP061185SRP061185_T5Single-cell RNA-seq of bone marrow-derived mesenchymal stem cells reveals unique profiles of lineage primingTranscriptomeMesenchymal stem cell (MSC)MouseBone marrowRNA-SeqMiSeqSequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000029580 Actb actin, beta 71.2387
2 ENSMUSG00000020368 Canx calnexin 69.8450
3 ENSMUSG00000029304 Spp1 secreted phosphoprotein 1 63.0374
4 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 53.3887
5 ENSMUSG00000064370 mt-Cytb mitochondrially encoded cytochrome b 51.9950
6 ENSMUSG00000022403 St13 suppression of tumorigenicity 13 45.9378
7 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 44.6513
8 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 42.5071
9 ENSMUSG00000092341 Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 40.8454
10 ENSMUSG00000068823 Csde1 cold shock domain containing E1, RNA binding 37.5220

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
54189 ENSMUSG00000116977 Gm49637 predicted gene, 49637 -0.1078
54188 ENSMUSG00000116976 4930500H12Rik RIKEN cDNA 4930500H12 gene -0.1078
54187 ENSMUSG00000116975 4930470H14Rik RIKEN cDNA 4930470H14 gene -0.1078
54186 ENSMUSG00000116974 Gm49761 predicted gene, 49761 -0.1078
54185 ENSMUSG00000116973 AV205837 expressed sequence AV205837 -0.1078
54184 ENSMUSG00000116972 Gm6278 predicted gene 6278 -0.1078
54183 ENSMUSG00000116971 Gm49766 predicted gene, 49766 -0.1078
54182 ENSMUSG00000116970 Gm49796 predicted gene, 49796 -0.1078
54181 ENSMUSG00000116969 Gm19771 predicted gene, 19771 -0.1078
54180 ENSMUSG00000116968 Gm49587 predicted gene, 49587 -0.1078

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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