SHOGoiN Cell Transcriptome: GSM1822030

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1822030


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6000001010000000000000-734Sequence Read ArchiveSRP061185SRP061185_T9Single-cell RNA-seq of bone marrow-derived mesenchymal stem cells reveals unique profiles of lineage primingTranscriptomeMesenchymal stem cell (MSC)MouseBone marrowRNA-SeqMiSeqSequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000092341 Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 175.2067
2 ENSMUSG00000102349 Gm37376 predicted gene, 37376 99.1314
3 ENSMUSG00000029580 Actb actin, beta 45.2717
4 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 25.7685
5 ENSMUSG00000064370 mt-Cytb mitochondrially encoded cytochrome b 24.7352
6 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 23.3145
7 ENSMUSG00000029304 Spp1 secreted phosphoprotein 1 22.4103
8 ENSMUSG00000020368 Canx calnexin 21.3771
9 ENSMUSG00000060802 B2m beta-2 microglobulin 18.7939
10 ENSMUSG00000026069 Il1rl1 interleukin 1 receptor-like 1 18.1481

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
54524 ENSMUSG00000117332 TEC -0.0635
54523 ENSMUSG00000117331 exocrine gland-secreting peptide pseudogene -0.0635
54522 ENSMUSG00000117330 ribosomal protein L18A (Rpl18a) pseudogene -0.0635
54521 ENSMUSG00000117329 zinc finger protein 541 (Zfp541) pseudogene -0.0635
54520 ENSMUSG00000117328 novel transcript, antisense to Smoc2 -0.0635
54519 ENSMUSG00000117327 NA -0.0635
54518 ENSMUSG00000117326 zinc ribbon domain containing 1, antisense (Znrd1as) pseudogene -0.0635
54517 ENSMUSG00000117325 Opa interacting protein 5 (Oip5) pseudogene -0.0635
54516 ENSMUSG00000117323 novel transcript -0.0635
54515 ENSMUSG00000117322 novel transcript, antisense to Zfp213 -0.0635

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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