Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1822030

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1822030


Profile download
6000001010000000000000-734Sequence Read ArchiveSRP061185SRP061185_T9Single-cell RNA-seq of bone marrow-derived mesenchymal stem cells reveals unique profiles of lineage primingTranscriptomeMesenchymal stem cell (MSC)MouseBone marrowRNA-SeqMiSeqSequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000092341 Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 175.2067
2 ENSMUSG00000102349 Gm37376 predicted gene, 37376 99.1314
3 ENSMUSG00000029580 Actb actin, beta 45.2717
4 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 25.7685
5 ENSMUSG00000064370 mt-Cytb mitochondrially encoded cytochrome b 24.7352
6 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 23.3145
7 ENSMUSG00000029304 Spp1 secreted phosphoprotein 1 22.4103
8 ENSMUSG00000020368 Canx calnexin 21.3771
9 ENSMUSG00000060802 B2m beta-2 microglobulin 18.7939
10 ENSMUSG00000026069 Il1rl1 interleukin 1 receptor-like 1 18.1481

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
54189 ENSMUSG00000116985 Gm49669 predicted gene, 49669 -0.0635
54188 ENSMUSG00000116984 4930549P19Rik RIKEN cDNA 4930549P19 gene -0.0635
54187 ENSMUSG00000116983 4930553J12Rik RIKEN cDNA 4930553J12 gene -0.0635
54186 ENSMUSG00000116982 4930567J20Rik RIKEN cDNA 4930567J20 gene -0.0635
54185 ENSMUSG00000116981 Gm49611 predicted gene, 49611 -0.0635
54184 ENSMUSG00000116980 Gm49597 predicted gene, 49597 -0.0635
54183 ENSMUSG00000116979 Gm32865 predicted gene, 32865 -0.0635
54182 ENSMUSG00000116978 Gm49765 predicted gene, 49765 -0.0635
54181 ENSMUSG00000116977 Gm49637 predicted gene, 49637 -0.0635
54180 ENSMUSG00000116976 4930500H12Rik RIKEN cDNA 4930500H12 gene -0.0635

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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