Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1822037

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1822037


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6000001010000000000000-734Sequence Read ArchiveSRP061185SRP061185_T16Single-cell RNA-seq of bone marrow-derived mesenchymal stem cells reveals unique profiles of lineage primingTranscriptomeMesenchymal stem cell (MSC)MouseBone marrowRNA-SeqMiSeqSequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000029580 Actb actin, beta 136.6196
2 ENSMUSG00000092341 Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 99.0907
3 ENSMUSG00000102349 Gm37376 predicted gene, 37376 73.2753
4 ENSMUSG00000017009 Sdc4 syndecan 4 61.2206
5 ENSMUSG00000029304 Spp1 secreted phosphoprotein 1 48.7678
6 ENSMUSG00000064341 mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 26.4210
7 ENSMUSG00000020368 Canx calnexin 24.9426
8 ENSMUSG00000001131 Timp1 tissue inhibitor of metalloproteinase 1 22.1564
9 ENSMUSG00000060802 B2m beta-2 microglobulin 22.0995
10 ENSMUSG00000021427 Ssr1 signal sequence receptor, alpha 21.8721

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
54189 ENSMUSG00000116982 4930567J20Rik RIKEN cDNA 4930567J20 gene -0.0767
54188 ENSMUSG00000116981 Gm49611 predicted gene, 49611 -0.0767
54187 ENSMUSG00000116980 Gm49597 predicted gene, 49597 -0.0767
54186 ENSMUSG00000116979 Gm32865 predicted gene, 32865 -0.0767
54185 ENSMUSG00000116978 Gm49765 predicted gene, 49765 -0.0767
54184 ENSMUSG00000116977 Gm49637 predicted gene, 49637 -0.0767
54183 ENSMUSG00000116976 4930500H12Rik RIKEN cDNA 4930500H12 gene -0.0767
54182 ENSMUSG00000116975 4930470H14Rik RIKEN cDNA 4930470H14 gene -0.0767
54181 ENSMUSG00000116974 Gm49761 predicted gene, 49761 -0.0767
54180 ENSMUSG00000116973 AV205837 expressed sequence AV205837 -0.0767

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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