SHOGoiN Cell Transcriptome: GSM1839504

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1839504


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1010201000800000000000-189Sequence Read ArchiveSRP061902SRP061902_T268Adult mouse cortical cell taxonomy by single cell transcriptomicsTranscriptomeAstro Gja1 (Cerebral cortex, VISp, L1-L2 and L3)MouseBrainRNA-SeqHiSeq 2000Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000092341 Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 169.9868
2 ENSMUSG00000102349 Gm37376 predicted gene, 37376 94.1044
3 ENSMUSG00000022037 Clu clusterin 57.2848
4 ENSMUSG00000064370 mt-Cytb mitochondrially encoded cytochrome b 38.9751
5 ENSMUSG00000017390 Aldoc aldolase C, fructose-bisphosphate 36.7259
6 ENSMUSG00000005089 Slc1a2 solute carrier family 1 (glial high affinity glutamate transporter), member 2 29.7852
7 ENSMUSG00000030235 Slco1c1 solute carrier organic anion transporter family, member 1c1 29.6660
8 ENSMUSG00000005360 Slc1a3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 29.2973
9 ENSMUSG00000030605 Mfge8 milk fat globule-EGF factor 8 protein 23.2096
10 ENSMUSG00000050953 Gja1 gap junction protein, alpha 1 22.7352

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
54189 ENSMUSG00000116982 4930567J20Rik RIKEN cDNA 4930567J20 gene -0.0471
54188 ENSMUSG00000116981 Gm49611 predicted gene, 49611 -0.0471
54187 ENSMUSG00000116980 Gm49597 predicted gene, 49597 -0.0471
54186 ENSMUSG00000116979 Gm32865 predicted gene, 32865 -0.0471
54185 ENSMUSG00000116978 Gm49765 predicted gene, 49765 -0.0471
54184 ENSMUSG00000116977 Gm49637 predicted gene, 49637 -0.0471
54183 ENSMUSG00000116976 4930500H12Rik RIKEN cDNA 4930500H12 gene -0.0471
54182 ENSMUSG00000116975 4930470H14Rik RIKEN cDNA 4930470H14 gene -0.0471
54181 ENSMUSG00000116974 Gm49761 predicted gene, 49761 -0.0471
54180 ENSMUSG00000116973 AV205837 expressed sequence AV205837 -0.0471

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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