Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM2041923

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2041923


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3110001010000000000000Sequence Read ArchiveSRP068586SRP068586_T8Single-cell RNA-seq of sorted and micro-dissected mouse bone marrow cellsTranscriptomeBone marrow cellMouseBone marrowRNA-SeqNextSeq 500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSMUSG00000075014 Gm10800 predicted gene 10800 217.5629
2 ENSMUSG00000098178 Gm42418 predicted gene, 42418 39.8378
3 ENSMUSG00000008730 Hipk1 homeodomain interacting protein kinase 1 34.6106
4 ENSMUSG00000064368 mt-Nd6 mitochondrially encoded NADH dehydrogenase 6 30.0368
5 ENSMUSG00000075015 Gm10801 predicted gene 10801 23.5028
6 ENSMUSG00000035202 Lars2 leucyl-tRNA synthetase, mitochondrial 23.1761
7 ENSMUSG00000064367 mt-Nd5 mitochondrially encoded NADH dehydrogenase 5 22.5227
8 ENSMUSG00000064351 mt-Co1 mitochondrially encoded cytochrome c oxidase I 16.3154
9 ENSMUSG00000011884 Gltp glycolipid transfer protein 11.7416
10 ENSMUSG00000064339 mt-Rnr2 mitochondrially encoded 16S rRNA 11.4149

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
54189 ENSMUSG00000116985 Gm49669 predicted gene, 49669 -0.0197
54188 ENSMUSG00000116984 4930549P19Rik RIKEN cDNA 4930549P19 gene -0.0197
54187 ENSMUSG00000116983 4930553J12Rik RIKEN cDNA 4930553J12 gene -0.0197
54186 ENSMUSG00000116982 4930567J20Rik RIKEN cDNA 4930567J20 gene -0.0197
54185 ENSMUSG00000116981 Gm49611 predicted gene, 49611 -0.0197
54184 ENSMUSG00000116980 Gm49597 predicted gene, 49597 -0.0197
54183 ENSMUSG00000116979 Gm32865 predicted gene, 32865 -0.0197
54182 ENSMUSG00000116978 Gm49765 predicted gene, 49765 -0.0197
54181 ENSMUSG00000116977 Gm49637 predicted gene, 49637 -0.0197
54180 ENSMUSG00000116976 4930500H12Rik RIKEN cDNA 4930500H12 gene -0.0197

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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