Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM967508

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type


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7020001000000000000000-715Sequence Read ArchiveSRP014428SRP014428_T1Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cellsTranscriptomeEmbryonic stem cell (Inner cell mass)HumanEarly embryonic tissueRNA-seqGenome Analyzer IIxSequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S rRNA 117.5704
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 75.7546
3 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 66.2782
4 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 64.1782
5 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 61.5926
6 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 55.7441
7 ENSG00000111640 GAPDH glyceraldehyde-3-phosphate dehydrogenase 32.3602
8 ENSG00000198899 MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 31.2839
9 ENSG00000203396 WDR45-like (WDR45L) pseudogene 30.9847
10 ENSG00000197061 H4C3 H4 clustered histone 3 30.2614

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.0927
58502 ENSG00000285736 Novel transcript -0.0927
58501 ENSG00000285735 LINC02717 long intergenic non-protein coding RNA 2717 -0.0927
58500 ENSG00000285734 novel transcript, antisense to CACNA1C -0.0927
58499 ENSG00000285733 novel protein -0.0927
58498 ENSG00000285732 novel transcript, antisense to ABCD2 -0.0927
58497 ENSG00000285731 Novel transcript, antisense to TBC1D5 -0.0927
58496 ENSG00000285730 novel transcript -0.0927
58495 ENSG00000285729 novel transcript -0.0927
58494 ENSG00000285727 novel transcript -0.0927

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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