Human Omics database for
the Generation of iPS and Normal Cells
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM967508
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM967508
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP014428
SRP014428_T1
Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
Transcriptome
Embryonic stem cell (Inner cell mass)
Human
Early embryonic tissue
RNA-seq
Genome Analyzer IIx
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000210082
MT-RNR2
mitochondrially encoded 16S rRNA
117.5704
2
ENSG00000198804
MT-CO1
mitochondrially encoded cytochrome c oxidase I
75.7546
3
ENSG00000198938
MT-CO3
mitochondrially encoded cytochrome c oxidase III
66.2782
4
ENSG00000198712
MT-CO2
mitochondrially encoded cytochrome c oxidase II
64.1782
5
ENSG00000198727
MT-CYB
mitochondrially encoded cytochrome b
61.5926
6
ENSG00000198886
MT-ND4
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4
55.7441
7
ENSG00000111640
GAPDH
glyceraldehyde-3-phosphate dehydrogenase
32.3602
8
ENSG00000198899
MT-ATP6
mitochondrially encoded ATP synthase membrane subunit 6
31.2839
9
ENSG00000203396
WDR45-like (WDR45L) pseudogene
30.9847
10
ENSG00000197061
H4C3
H4 clustered histone 3
30.2614
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285737
LINC02680
long intergenic non-protein coding RNA 2680
-0.0927
58502
ENSG00000285736
Novel transcript
-0.0927
58501
ENSG00000285735
LINC02717
long intergenic non-protein coding RNA 2717
-0.0927
58500
ENSG00000285734
novel transcript, antisense to CACNA1C
-0.0927
58499
ENSG00000285733
novel protein
-0.0927
58498
ENSG00000285732
novel transcript, antisense to ABCD2
-0.0927
58497
ENSG00000285731
Novel transcript, antisense to TBC1D5
-0.0927
58496
ENSG00000285730
novel transcript
-0.0927
58495
ENSG00000285729
novel transcript
-0.0927
58494
ENSG00000285727
novel transcript
-0.0927
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
download
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