Human Omics database for
the Generation of iPS and Normal Cells
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Statistics
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM967513
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM967513
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP014428
SRP014428_T6
Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
Transcriptome
Embryonic stem cell (Inner cell mass)
Human
Early embryonic tissue
RNA-seq
Genome Analyzer IIx
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000210082
MT-RNR2
mitochondrially encoded 16S rRNA
116.8452
2
ENSG00000198804
MT-CO1
mitochondrially encoded cytochrome c oxidase I
63.6969
3
ENSG00000198712
MT-CO2
mitochondrially encoded cytochrome c oxidase II
57.8113
4
ENSG00000198938
MT-CO3
mitochondrially encoded cytochrome c oxidase III
57.4836
5
ENSG00000198886
MT-ND4
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4
47.0144
6
ENSG00000075624
ACTB
actin beta
44.5245
7
ENSG00000203396
WDR45-like (WDR45L) pseudogene
36.3512
8
ENSG00000111640
GAPDH
glyceraldehyde-3-phosphate dehydrogenase
34.6415
9
ENSG00000198727
MT-CYB
mitochondrially encoded cytochrome b
32.4388
10
ENSG00000137818
RPLP1
ribosomal protein lateral stalk subunit P1
26.3304
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285735
LINC02717
long intergenic non-protein coding RNA 2717
-0.1104
58502
ENSG00000285734
novel transcript, antisense to CACNA1C
-0.1104
58501
ENSG00000285733
novel protein
-0.1104
58500
ENSG00000285732
novel transcript, antisense to ABCD2
-0.1104
58499
ENSG00000285731
Novel transcript, antisense to TBC1D5
-0.1104
58498
ENSG00000285729
novel transcript
-0.1104
58497
ENSG00000285727
novel transcript
-0.1104
58496
ENSG00000285726
novel transcript
-0.1104
58495
ENSG00000285725
novel transcript
-0.1104
58494
ENSG00000285724
novel transcript
-0.1104
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
download
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